Evidence map›Paper›PMID 37546997›Full record

ArticlebioRxiv : the preprint server for biology2023

Coordination of rhythmic RNA synthesis and degradation orchestrates 24-hour and 12-hour RNA expression patterns in mouse fibroblasts.

Benjamin A Unruh, Douglas E Weidemann, Shihoko Kojima

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Benjamin A UnruhDepartment of Biological Sciences, Fralin Life Sciences Institute, Virginia Tech, Blacksburg, VA USA.
Douglas E WeidemannDepartment of Biological Sciences, Fralin Life Sciences Institute, Virginia Tech, Blacksburg, VA USA.
Shihoko KojimaDepartment of Biological Sciences, Fralin Life Sciences Institute, Virginia Tech, Blacksburg, VA USA.
Virginia Tech · US

Funding

Functional analysis of a non-coding RNA in the mammalian circadian clock systemR01GM126223 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI KOJIMA, SHIHOKO · 2018 to 2022
$1.7M
Understanding rhythmic gene regulatory mechanisms in the mammalian circadian systemF31AG071393 · NIA · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI UNRUH, BENJAMIN · 2021 to 2023
$100k
NIA NIH HHS F31 AG071393NIGMS NIH HHS R01 GM126223
6 · The paper itself

Abstract

Circadian RNA expression is essential to ultimately regulate a plethora of downstream rhythmic biochemical, physiological, and behavioral processes. Both transcriptional and post-transcriptional mechanisms are considered important to drive rhythmic RNA expression, however, the extent to which each regulatory process contributes to the rhythmic RNA expression remains controversial. To systematically address this, we monitored RNA dynamics using metabolic RNA labeling technology during a circadian cycle in mouse fibroblasts. We find that rhythmic RNA synthesis is the primary contributor of 24 hr RNA rhythms, while rhythmic degradation is more important for 12 hr RNA rhythms. These rhythms were predominantly regulated by

Indexed as

4-thiouridinecircadian rhythmsmetabolic labelingmouse fibroblastrhythmic gene expressionRNA dynamics

Identifiers

PMID37546997
PMCPMC10402069
OpenAlexW4385310651

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.