Evidence map›Paper›PMID 37546903›Full record

ArticlebioRxiv : the preprint server for biology2023

Looking at the Full Picture: Utilizing Topic Modeling to Determine Disease-Associated Microbiome Communities.

Rachel L Shrode, Nicholas J Ollberding, Ashutosh K Mangalam

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Rachel L ShrodeDepartment of Informatics, University of Iowa, Iowa City, IA, 52242, USA.ORCID 0000-0001-8788-0984
Nicholas J OllberdingDivision of Biostatistics and Epidemiology; Cincinnati Children's Hospital Medical Center; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, 45267, USA.ORCID 0000-0001-9404-7368
Ashutosh K MangalamDepartment of Informatics, University of Iowa, Iowa City, IA, 52242, USA.ORCID 0000-0002-9926-2531
University of Iowa · USCincinnati Children's Hospital Medical Center · US

Funding

Pulmonary Toxicology Facility CoreP30ES005605 · NIEHS · UNIVERSITY OF IOWA · PI HANS-JOACHIM LEHMLER · 1990 to 2026
$40.5M
University of Iowa Institutional Training Program in Oral Health ResearchT90DE023520 · NIDCR · UNIVERSITY OF IOWA · PI STEVEN M. LEVY · 2013 to 2026
$5.6M
Linking diet, gut microbiota and autoimmune disease: Bacteria induced phytoestrogen metabolites impact immune function in Experimental Autoimmune EncephalitisR01AI137075 · NIAID · UNIVERSITY OF IOWA · PI MANGALAM, ASHUTOSH KUMAR · 2018 to 2022
$2.0M
The oral microbiome as a window into the pathobiology of multiple sclerosis, leading to new ideas for personalized microbial therapiesF31DE033564 · NIDCR · UNIVERSITY OF IOWA · PI FITZJERRELLS, RACHEL LYNN · 2023 to 2023
$44k
Effect of Gut Microbiome Dysbiosis in the Pathobiology of Multiple SclerosisI01CX002212 · VA · IOWA CITY VA MEDICAL CENTER · PI MANGALAM, ASHUTOSH KUMAR · 2021 to 2024
–
CSRD VA I01 CX002212NIAID NIH HHS R01 AI137075NIDCR NIH HHS F31 DE033564NIDCR NIH HHS T90 DE023520NIEHS NIH HHS P30 ES005605
6 · The paper itself

Abstract

The microbiome is a complex micro-ecosystem that provides the host with pathogen defense, food metabolism, and other vital processes. Alterations of the microbiome (dysbiosis) have been linked with a number of diseases such as cancers, multiple sclerosis (MS), Alzheimer's disease, etc. Generally, differential abundance testing between the healthy and patient groups is performed to identify important bacteria (enriched or depleted in one group). However, simply providing a singular species of bacteria to an individual lacking that species for health improvement has not been as successful as fecal matter transplant (FMT) therapy. Interestingly, FMT therapy transfers the entire gut microbiome of a healthy (or mixture of) individual to an individual with a disease. FMTs do, however, have limited success, possibly due to concerns that not all bacteria in the community may be responsible for the healthy phenotype. Therefore, it is important to identify the

Identifiers

PMID37546903
PMCPMC10401927
OpenAlexW4385238080

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.