Evidence map›Paper›PMID 37546843›Full record

ArticlebioRxiv : the preprint server for biology2023

Spatial Metabolome Lipidome and Glycome from a Single brain Section.

Harrison A Clarke, Xin Ma, Cameron J Shedlock, Terrymar Medina, Tara R Hawkinson, Lei Wu, Roberto A Ribas, Shannon Keohane, Sakthivel Ravi, Jennifer Bizon and 8 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Stem cells, cell therapies, and bioengineering in lung biology and diseases 2023.American journal of physiology. Lung cellular and molecular physiology · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Harrison A Clarke
Xin Ma
Cameron J Shedlock
Terrymar Medina
Tara R Hawkinson
Lei Wu
Roberto A Ribas
Shannon Keohane
Sakthivel Ravi
Jennifer Bizon
Sara Burke
Jose Francisco AbisambraORCID 0000-0001-6341-679X
Matthew Merritt
Boone Prentice
Craig W Vander Kooi
Matthew S Gentry

Funding

Brain Glycogen-Metabolism,Mechanisms, and Therapeutic PotentialR35NS116824 · NINDS · UNIVERSITY OF KENTUCKY · PI Matthew S. Gentry · 2020 to 2026
$8.2M
NINDS NIH HHS R35 NS116824
6 · The paper itself

Abstract

Metabolites, lipids, and glycans are fundamental biomolecules involved in complex biological systems. They are metabolically channeled through a myriad of pathways and molecular processes that define the physiology and pathology of an organism. Here, we present a blueprint for the simultaneous analysis of spatial metabolome, lipidome, and glycome from a single tissue section using mass spectrometry imaging. Complimenting an original experimental protocol, our workflow includes a computational framework called Spatial Augmented Multiomics Interface (Sami) that offers multiomics integration, high dimensionality clustering, spatial anatomical mapping with matched multiomics features, and metabolic pathway enrichment to providing unprecedented insights into the spatial distribution and interaction of these biomolecules in mammalian tissue biology.

Identifiers

PMID37546843
PMCPMC10401929

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.