Evidence map›Paper›PMID 37546789›Full record

ArticlebioRxiv : the preprint server for biology2023

An adaptive biomolecular condensation response is conserved across environmentally divergent species.

Samantha Keyport Kik, Dana Christopher, Hendrik Glauninger, Caitlin Wong Hickernell, Jared A M Bard, Michael Ford, Tobin R Sosnick, D Allan Drummond

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Samantha Keyport KikCommittee on Genetics, Genomics, and Systems Biology, The University of Chicago, Chicago, IL.
Dana ChristopherDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL.
Hendrik GlauningerGraduate Program in Biophysical Sciences, The University of Chicago, Chicago, IL.
Caitlin Wong HickernellDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL.
Jared A M BardDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL.
Michael FordMS Bioworks, Ann Arbor, MI.
Tobin R SosnickDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL.
D Allan DrummondDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL.

Funding

PREDOCTORAL TRAINING IN GENETICS AND REGULATIONT32GM007197 · NIGMS · UNIVERSITY OF CHICAGO · PI ROTHMAN-DENES, LUCIA B. B · 1985 to 2020
$17.0M
Kinetic studies of protein foldingR01GM055694 · NIGMS · UNIVERSITY OF CHICAGO · PI SOSNICK, TOBIN R · 2001 to 2022
$7.6M
Function and Regulation of Stress-Induced Adaptive CondensatesR35GM144278 · NIGMS · UNIVERSITY OF CHICAGO · PI David Allan Drummond · 2022 to 2026
$2.6M
Signatures of interaction-driven selection on low-complexity sequencesR01GM127406 · NIGMS · UNIVERSITY OF CHICAGO · PI DRUMMOND, DAVID ALLAN · 2018 to 2021
$1.1M
Cellular stress sensing via biomolecular condensationF31ES032337 · NIEHS · UNIVERSITY OF CHICAGO · PI KEYPORT, SAMANTHA · 2020 to 2023
$124k
NIEHS NIH HHS F31 ES032337NIGMS NIH HHS R01 GM055694NIGMS NIH HHS R01 GM127406NIGMS NIH HHS R35 GM144278NIGMS NIH HHS T32 GM007197
6 · The paper itself

Abstract

Cells must sense and respond to sudden maladaptive environmental changes-stresses-to survive and thrive. Across eukaryotes, stresses such as heat shock trigger conserved responses: growth arrest, a specific transcriptional response, and biomolecular condensation of protein and mRNA into structures known as stress granules under severe stress. The composition, formation mechanism, adaptive significance, and even evolutionary conservation of these condensed structures remain enigmatic. Here we provide an unprecedented view into stress-triggered condensation, its evolutionary conservation and tuning, and its integration into other well-studied aspects of the stress response. Using three morphologically near-identical budding yeast species adapted to different thermal environments and diverged by up to 100 million years, we show that proteome-scale biomolecular condensation is tuned to species-specific thermal niches, closely tracking corresponding growth and transcriptional responses. In each species, poly(A)-binding protein-a core marker of stress granules-condenses in isolation at species-specific temperatures, with conserved molecular features and conformational changes modulating condensation. From the ecological to the molecular scale, our results reveal previously unappreciated levels of evolutionary selection in the eukaryotic stress response, while establishing a rich, tractable system for further inquiry.

Identifiers

PMID37546789
PMCPMC10402146

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.