Evidence map›Paper›PMID 37545033›Full record

ArticleTraffic (Copenhagen, Denmark)2023

Statistical modeling of mRNP transport in dendrites: A comparative analysis of β-actin and Arc mRNP dynamics.

Hyerim Ahn, Xavier Durang, Jae Youn Shim, Gaeun Park, Jae-Hyung Jeon, Hye Yoon Park

Open access · hybridAbstract read
In one paragraph

Article in Traffic (Copenhagen, Denmark), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Hyerim AhnDepartment of Electrical and Computer Engineering, University of Minnesota, Minneapolis, Minneapolis, USA.ORCID 0000-0003-0073-0911
Xavier DurangDepartment of Physics, Pohang University of Science and Technology, Pohang, Republic of Korea.ORCID 0000-0003-2251-4857
Jae Youn ShimDepartment of Physics and Astronomy, Seoul National University, Seoul, Republic of Korea.ORCID 0000-0001-7332-4696
Gaeun ParkDepartment of Physics and Astronomy, Seoul National University, Seoul, Republic of Korea.
Jae-Hyung JeonDepartment of Physics, Pohang University of Science and Technology, Pohang, Republic of Korea.ORCID 0000-0003-0658-9672
Hye Yoon ParkDepartment of Electrical and Computer Engineering, University of Minnesota, Minneapolis, Minneapolis, USA.ORCID 0000-0003-4704-8178
Pohang University of Science and Technology · KRSeoul National University · KRUniversity of Minnesota · US

Funding

Wellcome TrustWellcome Trust 208468/Z/17/Z
6 · The paper itself

Abstract

Localization of messenger RNA (mRNA) in dendrites is crucial for regulating gene expression during long-term memory formation. mRNA binds to RNA-binding proteins (RBPs) to form messenger ribonucleoprotein (mRNP) complexes that are transported by motor proteins along microtubules to their target synapses. However, the dynamics by which mRNPs find their target locations in the dendrite have not been well understood. Here, we investigated the motion of endogenous β-actin and Arc mRNPs in dissociated mouse hippocampal neurons using the MS2 and PP7 stem-loop systems, respectively. By evaluating the statistical properties of mRNP movement, we found that the aging Lévy walk model effectively describes both β-actin and Arc mRNP transport in proximal dendrites. A critical difference between β-actin and Arc mRNPs was the aging time, the time lag between transport initiation and measurement initiation. The longer mean aging time of β-actin mRNP (~100 s) compared with that of Arc mRNP (~30 s) reflects the longer half-life of constitutively expressed β-actin mRNP. Furthermore, our model also permitted us to estimate the ratio of newly generated and pre-existing β-actin mRNPs in the dendrites. This study offers a robust theoretical framework for mRNP transport, which provides insight into how mRNPs locate their targets in neurons.

Indexed as

ActinsRibonucleoproteinsAnimalsDendritesMiceRNA, MessengerActinsmessenger ribonucleoproteinRibonucleoproteinsRNA, MessengerArcdendritic transportLévy walkmRNA localizationβ-actin

Identifiers

PMID37545033
PMCPMC10946522
OpenAlexW4385620665

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.