Evidence map›Paper›PMID 37544942›Full record

ArticleIntensive care medicine experimental2023

Clinical phenotypes and outcomes associated with SARS-CoV-2 Omicron variants BA.2, BA.5 and BQ.1.1 in critically ill patients with COVID-19: a prospective, multicenter cohort study.

Nicolas de Prost, Etienne Audureau, Sébastien Préau, Raphaël Favory, Aurélie Guigon, Pierre Bay, Nicholas Heming, Elyanne Gault, Tài Pham, Amal Chaghouri and 25 more

Abstract read
In one paragraph

Article in Intensive care medicine experimental, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors.

Nicolas de ProstService de Médecine Intensive Réanimation, Hôpitaux Universitaires Henri Mondor, Assistance Publique, Hôpitaux de Paris (AP-HP), Créteil, France. nicolas.de-prost@aphp.fr.ORCID http://orcid.org/0000-0002-4833-4320
Etienne AudureauUniversité Paris-Est-Créteil (UPEC), Créteil, France.
Sébastien PréauU1167, RID-AGE Facteurs de Risque et Déterminants Moléculaires des Maladies Liées au Vieillissement, University Lille, Inserm, CHU Lille, Institut Pasteur de Lille, 59000, Lille, France.
Raphaël FavoryU1167, RID-AGE Facteurs de Risque et Déterminants Moléculaires des Maladies Liées au Vieillissement, University Lille, Inserm, CHU Lille, Institut Pasteur de Lille, 59000, Lille, France.
Aurélie GuigonService de Virologie, CHU de Lille, 59000, Lille, France.
Pierre BayService de Médecine Intensive Réanimation, Hôpitaux Universitaires Henri Mondor, Assistance Publique, Hôpitaux de Paris (AP-HP), Créteil, France.
Nicholas HemingMédecine Intensive Réanimation, Hôpital Raymond Poincaré, Assistance Publique, Hôpitaux de Paris (AP-HP), Garches, France.
Elyanne GaultLaboratoire de Virologie, Hôpital Ambroise Paré, Assistance Publique, Hôpitaux de Paris (AP-HP), Boulogne, France.
Tài PhamGroupe de Recherche Clinique CARMAS, Université Paris-Est-Créteil (UPEC), Créteil, France.
Amal ChaghouriLaboratoire de Virologie, Hôpital Paul Brousse, Assistance Publique, Hôpitaux de Paris, Villejuif, France.
Guillaume VoiriotSorbonne Université, Centre de Recherche Saint-Antoine INSERM, Médecine Intensive Réanimation, Hôpital Tenon, Assistance Publique, Hôpitaux de Paris, Paris, France.
Laurence Morand-JoubertSorbonne Université, INSERM, Institut Pierre Louis d'Epidémiologie et de Santé Publique, Paris, France.
Sébastien JochmansService de Réanimation Polyvalente, Hôpital Marc Jacquet, Melun, France.
Aurélia PitschLaboratoire de Microbiologie, Hôpital Marc Jacquet, Melun, France.
Sylvie MeirelesService de Réanimation Médico-Chirurgicale, Assistance Publique, Hôpitaux de Paris, Hôpital Ambroise Paré, Boulogne, France.
Damien ContouService de Réanimation, Hôpital Victor Dupouy, Argenteuil, France.
Amandine HenryService de Virologie, Hôpital Victor Dupouy, Argenteuil, France.
Adrien JosephMédecine Intensive Réanimation, Hôpital Saint-Louis, Assistance Publique, Hôpitaux de Paris, Paris, France.
Marie-Laure ChaixUniversité de Paris, Inserm HIPI, 75010, Paris, France.
Fabrice Uheln, Université de Paris, APHP, Hôpital Louis Mourier, DMU ESPRIT, Service de Médecine Intensive Réanimatio, Colombes, France.
Diane DescampsUniversité de Paris, IAME INSERM UMR 1137, Service de Virologie, Hôpital Bichat-Claude Bernard, Assistance Publique, Hôpitaux de Paris, Paris, France.
Malo EmeryService de Réanimation, Hôpital Saint-Camille, Bry-Sur-Marne, France.
Claudio Garcia-SanchezLaboratoire de Biologie, Hôpital Saint-Camille, Bry-Sur-Marne, France.
Charles-Edouard LuytSorbonne Université, Assistance Publique, Hôpitaux de Paris, Hôpital Pitié-Salpêtrière, Médecine Intensive Réanimation, Paris, France.
Stéphane MarotDépartement de Virologie, Hôpital Pitié-Salpêtrière, Assistance Publique-Hôpitaux de Paris (AP-HP), Paris, France.
Frédéric PèneMédecine Intensive Réanimation, Hôpital Cochin, Assistance Publique, Hôpitaux de Paris, Paris, France.
Anne-Sophie LhonneurLaboratoire de Virologie, Hôpital Cochin, Assistance Publique, Hôpitaux de Paris, Paris, France.
Stéphane GaudryService de Réanimation, Hôpital Avicenne, Assistance Publique, Hôpitaux de Paris, Bobigny, France.
Ségolène BrichlerLaboratoire de Virologie, Hôpital Avicenne, Assistance Publique, Hôpitaux de Paris, Bobigny, France.
Lucile PicardDépartement d'Anesthésie Réanimations Chirurgicales, Hôpitaux Universitaires Henri Mondor, Assistance Publique, Hôpitaux de Paris (AP-HP), Créteil, France.
Armand Mekontso DessapService de Médecine Intensive Réanimation, Hôpitaux Universitaires Henri Mondor, Assistance Publique, Hôpitaux de Paris (AP-HP), Créteil, France.
Christophe RodriguezUniversité Paris-Est-Créteil (UPEC), Créteil, France.
Jean-Michel PawlotskyUniversité Paris-Est-Créteil (UPEC), Créteil, France.
Slim FouratiUniversité Paris-Est-Créteil (UPEC), Créteil, France.
SEVARVIR investigators

Funding

EMERGEN consortium - ANRS Maladies Infectieuses Emergentes ANRS0153
6 · The paper itself

Abstract

backgroundDespite current broad natural and vaccine-induced protection, a substantial number of patients infected with emerging SARS-CoV-2 variants (e.g., BF.7 and BQ.1.1) still experience severe COVID-19. Real-life studies investigating the impact of these variants on clinical outcomes of severe cases are currently not available. We performed a prospective multicenter observational cohort study. Adult patients with acute respiratory failure admitted between December 7, 2021 and December 15, 2022, in one of the 20 participating intensive care units (17 from the Greater Paris area and 3 from the North of France) were eligible for inclusion if they had SARS-CoV-2 infection confirmed by a positive reverse transcriptase-polymerase chain reaction (RT-PCR). Full-length SARS-CoV-2 genomes from all included patients were sequenced by means of next-generation sequencing. The primary endpoint of the study was day-28 mortality.

resultsThe study included 158 patients infected with three groups of Omicron sublineages, including (i) BA.2 variants and their early sublineages referred as "BA.2" (n = 50), (ii) early BA.4 and BA.5 sublineages (including BA.5.1 and BA.5.2, n = 61) referred as "BA.4/BA.5", and (iii) recent emerging BA.5 sublineages (including BQ.1, BQ.1.1, BF.7, BE.1 and CE.1, n = 47) referred as "BQ.1.1". The clinical phenotype of BQ1.1-infected patients compared to earlier BA.2 and BA.4/BA.5 sublineages, showed more frequent obesity and less frequent immunosuppression. There was no significant difference between Omicron sublineage groups regarding the severity of the disease at ICU admission, need for organ failure support during ICU stay, nor day 28 mortality (21.7%, n = 10/47 in BQ.1.1 group vs 26.7%, n = 16/61 in BA.4/BA.5 vs 22.0%, n = 11/50 in BA.2, p = 0.791). No significant relationship was found between any SARS-CoV-2 substitution and/or deletion on the one hand and survival on the other hand over hospital follow-up.

conclusionsCritically-ill patients with Omicron BQ.1.1 infection showed a different clinical phenotype than other patients infected with earlier Omicron sublineage but no day-28 mortality difference.

Indexed as

Acute respiratory failureCOVID-19OmicronSARS-CoV-2Sublineage

Identifiers

PMID37544942
PMCPMC10404579

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.