Evidence map›Paper›PMID 37542722›Full record

ArticleCell reports2023

All-optical recreation of naturalistic neural activity with a multifunctional transgenic reporter mouse.

Hayley A Bounds, Masato Sadahiro, William D Hendricks, Marta Gajowa, Karthika Gopakumar, Daniel Quintana, Bosiljka Tasic, Tanya L Daigle, Hongkui Zeng, Ian Antón Oldenburg and 1 more

Abstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. The Importance of Synchrony in the Neural Control of Movement.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Circuit Organization of the Forelimb-Related M2-to-M1 Corticocortical Pathway in the Mouse.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2026
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. A large field of view 2- and 3-photon microscope.Light, science & applications · 2025
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Hayley A BoundsDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA; The Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA.
Masato SadahiroDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
William D HendricksDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
Marta GajowaDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
Karthika GopakumarDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
Daniel QuintanaDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
Bosiljka TasicAllen Institute for Brain Science, Seattle, WA, USA.
Tanya L DaigleAllen Institute for Brain Science, Seattle, WA, USA.
Hongkui ZengAllen Institute for Brain Science, Seattle, WA, USA.
Ian Antón OldenburgDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA. Electronic address: ian.oldenburg@rutgers.edu.
Hillel AdesnikDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA; The Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA. Electronic address: hadesnik@berkeley.edu.

Funding

Generation of novel cell type specific mouse genetic toolsU19MH114830 · NIMH · ALLEN INSTITUTE · PI ZENG, HONGKUI · 2017 to 2021
$64.7M
Validating Theoretical Models with Neurophysiology and OptogeneticsU19NS107613 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MILLER, KENNETH D, SCANZIANI, MASSIMO · 2018 to 2022
$16.7M
Excitation and Inhibition in Neural Circuits of the Visual CortexR01EY023756 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Hillel Adesnik · 2013 to 2026
$6.1M
High speed, high precision volumetric multiphoton neural controlUF1NS107574 · NINDS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ADESNIK, HILLEL · 2018 to 2018
$5.1M
Mesoscale bidirectional two-photon holographic optogeneticsRF1NS128772 · NINDS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ADESNIK, HILLEL · 2022 to 2022
$3.2M
High-throughput Physiological Micro-connectivity Mapping in VivoRF1MH120680 · NIMH · UNIVERSITY OF CALIFORNIA BERKELEY · PI ADESNIK, HILLEL · 2019 to 2021
$2.2M
Editing the Neural Basis of PerceptionR00EY029758 · NEI · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI OLDENBURG, IAN ANTON · 2022 to 2024
$747k
Editing the Neural Basis of PerceptionK99EY029758 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI OLDENBURG, IAN ANTON · 2019 to 2021
$315k
Cell-Type-Specific Mechanisms of Contextual Modulation in the Visual CortexF32EY034022 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI SADAHIRO, MASATO · 2022 to 2024
$218k
Role of cortical interneurons in visual perceptionF32EY031977 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI HENDRICKS, WILLIAM DAVID · 2020 to 2022
$201k
NEI NIH HHS F32 EY031977NEI NIH HHS F32 EY034022NEI NIH HHS K99 EY029758NEI NIH HHS R00 EY029758NEI NIH HHS R01 EY023756NIMH NIH HHS RF1 MH120680NIMH NIH HHS U19 MH114830NINDS NIH HHS RF1 NS128772NINDS NIH HHS U19 NS107613NINDS NIH HHS UF1 NS107574
6 · The paper itself

Abstract

Determining which features of the neural code drive behavior requires the ability to simultaneously read out and write in neural activity patterns with high precision across many neurons. All-optical systems that combine two-photon calcium imaging and targeted photostimulation enable the activation of specific, functionally defined groups of neurons. However, these techniques are unable to test how patterns of activity across a population contribute to computation because of an inability to both read and write cell-specific firing rates. To overcome this challenge, we make two advances: first, we introduce a genetic line of mice for Cre-dependent co-expression of a calcium indicator and a potent soma-targeted microbial opsin. Second, using this line, we develop a method for read-out and write-in of precise population vectors of neural activity by calibrating the photostimulation to each cell. These advances offer a powerful and convenient platform for investigating the neural codes of computation and behavior.

Indexed as

CalciumOptogeneticsAnimalsMiceMice, TransgenicNeuronsRecreationCalcium2-photon imaging2-photon optogeneticsall-opticalCP: NeuroscienceGCaMPholographic optogeneticsneural circuitsneural manifoldpopulation vectorsTIGRE2.0transgenic mousevisual cortex

Identifiers

PMID37542722
PMCPMC10755854

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.