Evidence map›Paper›PMID 37542623›Full record

ArticleAntonie van Leeuwenhoek2023

Genomic insights and comparative analysis of Flavobacterium bizetiae HJ-32-4 isolated from soil.

Jisu Kim, In-Tae Cha, Ki-Eun Lee, Youn Kyoung Son, Jaewoong Yu, Donghyeok Seol

Abstract read
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In one paragraph

Article in Antonie van Leeuwenhoek, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 67% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jisu KimDepartment of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea.ORCID https://orcid.org/0000-0003-2933-2589
In-Tae ChaNational Institute of Biological Resources, 42 Hwangyeong-ro, Seo-gu, Incheon, 22689, Republic of Korea.
Ki-Eun LeeNational Institute of Biological Resources, 42 Hwangyeong-ro, Seo-gu, Incheon, 22689, Republic of Korea.
Youn Kyoung SonNational Institute of Biological Resources, 42 Hwangyeong-ro, Seo-gu, Incheon, 22689, Republic of Korea.
Jaewoong YueGnome, Inc., 26 Beobwon-ro 9-gil, Songpa-gu, Seoul, 05836, Republic of Korea. jwyu@egnome.co.kr.
Donghyeok SeolDepartment of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea. sdh1621@snu.ac.kr.ORCID https://orcid.org/0000-0001-9695-5861
National Institute of Biological Resources · KRSeoul National University · KR

Funding

National Institute of Biological Resources NIBR202134204
6 · The paper itself

Abstract

In the late 1970s, Flavobacterium bizetiae was first isolated from diseased fish in Canada. After four decades of preservation, it was reported as a novel species in 2020. Here, we report the first complete genome sequence of HJ-32-4, a novel strain of F. bizetiae. Interestingly, HJ-32-4 was isolated from soil in Gangwon-do, Republic of Korea, unlike the other two previously reported F. bizetiae strains which were isolated from fish. We generated a single circular chromosome of HJ-32-4, comprising 5,745,280 bp with a GC content of 34.2%. The average nucleotide identity (ANI) value of 96.2% indicated that HJ-32-4 belongs to F. bizetiae CIP 105534

Indexed as

FlavobacteriumSoilAnimalsDNA, BacterialFatty AcidsFishesGenomicsPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNAVirulence FactorsDNA, BacterialFatty AcidsRNA, Ribosomal, 16SSoilVirulence FactorsComparative genomicsComplete genome sequenceFlavobacterium bizetiaeNon-pathogenic bacteriaSoil environment

Identifiers

PMID37542623
OpenAlexW4385607604

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.