Evidence map›Paper›PMID 37540725›Full record

ArticlePloS one2023

PHRF1 promotes the class switch recombination of IgA in CH12F3-2A cells.

Jin-Yu Lee, Nai-Lin Chou, Ya-Ru Yu, Hsin-An Shih, Hung-Wei Lin, Chine-Kuo Lee, Mau-Sun Chang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Effects of Oregano Essential Oil on IgAAnimals : an open access journal from MDPI · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jin-Yu LeeInstitute of Biochemical Sciences, National Taiwan University, Taipei, Taiwan.
Nai-Lin ChouInstitute of Biochemical Sciences, National Taiwan University, Taipei, Taiwan.
Ya-Ru YuGraduate Institute of Immunology, National Taiwan University College of Medicine, Taipei, Taiwan.
Hsin-An ShihInstitute of Biochemical Sciences, National Taiwan University, Taipei, Taiwan.
Hung-Wei LinInstitute of Biochemical Sciences, National Taiwan University, Taipei, Taiwan.
Chine-Kuo LeeGraduate Institute of Immunology, National Taiwan University College of Medicine, Taipei, Taiwan.
Mau-Sun ChangInstitute of Biochemical Sciences, National Taiwan University, Taipei, Taiwan.ORCID 0000-0002-3703-2386
National Taiwan University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PHRF1 is an E3 ligase that promotes TGF-β signaling by ubiquitinating a homeodomain repressor TG-interacting factor (TGIF). The suppression of PHRF1 activity by PML-RARα facilitates the progression of acute promyelocytic leukemia (APL). PHRF1 also contributes to non-homologous end-joining in response to DNA damage by linking H3K36me3 and NBS1 with DNA repair machinery. However, its role in class switch recombination (CSR) is not well understood. In this study, we report the importance of PHRF1 in IgA switching in CH12F3-2A cells and CD19-Cre mice. Our studies revealed that Crispr-Cas9 mediated PHRF1 knockout and shRNA-silenced CH12F3-2A cells reduced IgA production, as well as decreased the amounts of PARP1, NELF-A, and NELF-D. The introduction of PARP1 could partially restore IgA production in PHRF1 knockout cells. Intriguingly, IgA, as well as IgG1, IgG2a, and IgG3, switchings were not significantly decreased in PHRF1 deficient splenic B lymphocytes isolated from CD19-Cre mice. The levels of PARP1 and NELF-D were not decreased in PHRF1-depleted primary splenic B cells. Overall, our findings suggest that PHRF1 may modulate IgA switching in CH12F3-2A cells.

Indexed as

DNA-Binding ProteinsImmunoglobulin Class SwitchingAnimalsDNA End-Joining RepairDNA RepairImmunoglobulin AMembrane ProteinsMiceDNA-Binding ProteinsImmunoglobulin AMembrane ProteinsPhrf1 protein, mouse

Identifiers

PMID37540725
PMCPMC10403053
OpenAlexW4385610995

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.