Evidence map›Paper›PMID 37540590›Full record

ArticleChemical research in toxicology2023

A Weakly Supervised Deep Learning Framework for Whole Slide Classification to Facilitate Digital Pathology in Animal Study.

Nicole Bussola, Joshua Xu, Leihong Wu, Lorenzo Gorini, Yifan Zhang, Cesare Furlanello, Weida Tong

Open access · hybridAbstract read
In one paragraph

Article in Chemical research in toxicology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Nicole BussolaCenter for Integrative Biology, University of Trento, Trento 38123, Italy.
Joshua XuDivision of Bioinformatics and Biostatistics National Center for Toxicological Research, Food and Drug Administration, Jefferson, Arkansas 72079, United States.
Leihong WuDivision of Bioinformatics and Biostatistics National Center for Toxicological Research, Food and Drug Administration, Jefferson, Arkansas 72079, United States.ORCID 0000-0002-4093-3708
Lorenzo GoriniHK3 Lab, Rovereto 38068, Italy.
Yifan ZhangDivision of Bioinformatics and Biostatistics National Center for Toxicological Research, Food and Drug Administration, Jefferson, Arkansas 72079, United States.
Cesare FurlanelloHK3 Lab, Rovereto 38068, Italy.
Weida TongDivision of Bioinformatics and Biostatistics National Center for Toxicological Research, Food and Drug Administration, Jefferson, Arkansas 72079, United States.ORCID 0000-0003-3488-6148
National Center for Toxicological Research · USCenter for Neuroscience and Cognitive Systems · ITUniversity of Trento · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The pathology of animal studies is crucial for toxicity evaluations and regulatory assessments, but the manual examination of slides by pathologists remains time-consuming and requires extensive training. One inherent challenge in this process is the interobserver variability, which can compromise the consistency and accuracy of a study. Artificial intelligence (AI) has demonstrated its ability to automate similar examinations in clinical applications with enhanced efficiency, consistency, and accuracy. However, training AI models typically relies on costly pixel-level annotation of injured regions and is often not available for animal pathology. To address this, we developed the PathologAI system, a "weakly" supervised approach for WSI classification in rat images without explicit lesion annotation at the pixel level. Using rat liver imaging data from the Open TG-GATEs system, PathologAI was applied to predict necrosis of

Indexed as

Artificial IntelligenceDeep LearningAnimalsNecrosisRats

Identifiers

PMID37540590
PMCPMC10445282
OpenAlexW4385575567

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.