Evidence map›Paper›PMID 37540482›Full record

ArticleFamilial cancer2023

Combining clinical and molecular characterization of CDH1: a multidisciplinary approach to reclassification of a splicing variant.

Corrine Fillman, Arravinth Anantharajah, Briana Marmelstein, Monica Dillon, Carolyn Horton, Candace Peterson, Joseph Lopez, Rashmi Tondon, Terra Brannan, Bryson W Katona

Abstract readCase Reports
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In one paragraph

Article in Familial cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Corrine Fillman *Cancer Risk and Genetics Program, St. Luke's University Health Network, Bethlehem, PA, USA.
Arravinth Anantharajah *University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Briana MarmelsteinCancer Risk and Genetics Program, St. Luke's University Health Network, Bethlehem, PA, USA.
Monica DillonCancer Risk and Genetics Program, St. Luke's University Health Network, Bethlehem, PA, USA.
Carolyn HortonAmbry Genetics, Aliso Viejo, CA, USA.
Candace PetersonAmbry Genetics, Aliso Viejo, CA, USA.
Joseph LopezCancer Risk and Genetics Program, St. Luke's University Health Network, Bethlehem, PA, USA.
Rashmi TondonUniversity of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Terra BrannanAmbry Genetics, Aliso Viejo, CA, USA.
Bryson W KatonaUniversity of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA. bryson.katona@pennmedicine.upenn.edu.
Ambry Genetics (United States) · USUniversity of Pennsylvania · US

Funding

DeGregorio Family Foundation N/A
6 · The paper itself

Abstract

Pathogenic germline variants (PGVs) in the CDH1 gene are associated with diffuse gastric and lobular breast cancer syndrome (DGLBC) and can increase the lifetime risk for both diffuse gastric cancer and lobular breast cancer. Given the risk for diffuse gastric cancer among individuals with CDH1 PGVs is up to 30-40%, prophylactic total gastrectomy is often recommended to affected individuals. Therefore, accurate interpretation of CDH1 variants is of the utmost importance for proper clinical decision-making. Herein we present a 45-year-old female, with lobular breast cancer and a father with gastric cancer of unknown pathology at age 48, who was identified to have an intronic variant of uncertain significance in the CDH1 gene, specifically c.833-9 C > G. Although the proband did not meet the International Gastric Cancer Linkage Consortium (IGCLC) criteria for gastric surveillance, she elected to pursue an upper endoscopy where non-targeted gastric biopsies identified a focus of signet ring cell carcinoma (SRCC). The proband then underwent a total gastrectomy, revealing numerous SRCC foci, but no invasive diffuse gastric cancer. Simultaneously, a genetic testing laboratory performed RNA sequencing to further analyze the CDH1 intronic variant, identifying an abnormal transcript from a novel acceptor splice site. The RNA analysis in conjunction with the patient's gastric foci of SRCC and family history was sufficient evidence for reclassification of the variant from uncertain significance to likely pathogenic. In conclusion, we report the first case of the CDH1 c.833-9 C > G intronic variant being associated with DGLBC and illustrate how collaboration among clinicians, laboratory personnel, and patients is crucial for variant resolution.

Indexed as

Antigens, CDBreast NeoplasmsCadherinsCarcinoma, LobularCarcinoma, Signet Ring CellStomach NeoplasmsFemaleGastrectomyGerm-Line MutationHumansMaleMiddle AgedPedigreeAntigens, CDCadherinsCDH1 protein, humanCDH1Hereditary diffuse gastric cancerLobular breast cancerRNA sequencing

Identifiers

PMID37540482
OpenAlexW4385563780

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.