Evidence map›Paper›PMID 37540118›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2023

An Ancient MHC-Linked Gene Encodes a Nonrearranging Shark Antibody, UrIg, Convergent with IgG.

Martin F Flajnik, Robyn Stanfield, Elena N Pokidysheva, Sergei P Boudko, Ian Wilson, Yuko Ohta

Open access · greenAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Martin F FlajnikDepartment of Microbiology and Immunology, University of Maryland, Baltimore, MD.ORCID 0000-0002-2792-5084
Robyn StanfieldDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA.ORCID 0000-0001-9521-9184
Elena N PokidyshevaDivision of Nephrology and Hypertension, Department of Medicine, Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN.ORCID 0000-0001-6167-6678
Sergei P BoudkoDivision of Nephrology and Hypertension, Department of Medicine, Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN.
Ian WilsonDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA.ORCID 0000-0002-6469-2419
Yuko OhtaDepartment of Microbiology and Immunology, University of Maryland, Baltimore, MD.ORCID 0000-0002-2348-9107
Scripps Research Institute · USUniversity of Maryland, Baltimore · USVanderbilt University · USVanderbilt University Medical Center · US

Funding

Determining the Origins of Nonclassical Class I molecules through Molecular and Functional ApproachesR01AI170844 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI Erin June Adams, Martin F Flajnik · 2022 to 2026
$3.5M
Evolution of Adaptive ImmunityR01AI140326 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI FLAJNIK, MARTIN F · 2019 to 2022
$1.4M
NIAID NIH HHS R01 AI140326NIAID NIH HHS R01 AI170844
6 · The paper itself

Abstract

Gnathostome adaptive immunity is defined by the Ag receptors, Igs and TCRs, and the MHC. Cartilaginous fish are the oldest vertebrates with these adaptive hallmarks. We and others have unearthed nonrearranging Ag receptor-like genes in several vertebrates, some of which are encoded in the MHC or in MHC paralogous regions. One of these genes, named UrIg, was detected in the class III region of the shark MHC that encodes a protein with typical V and C domains such as those found in conventional Igs and TCRs. As no transmembrane region was detected in gene models or cDNAs, the protein does not appear to act as a receptor. Unlike some other shark Ig genes, the UrIg V region shows no evidence of RAG-mediated rearrangement, and thus it is likely related to other V genes that predated the invasion of the RAG transposon. The UrIg gene is present in all elasmobranchs and evolves conservatively, unlike Igs and TCRs. Also, unlike Ig/TCR, the gene is not expressed in secondary lymphoid tissues, but mainly in the liver. Recombinant forms of the molecule form disulfide-linked homodimers, which is the form also detected in many shark tissues by Western blotting. mAbs specific for UrIg identify the protein in the extracellular matrix of several shark tissues by immunohistochemistry. We propose that UrIg is related to the V gene invaded by the RAG transposon, consistent with the speculation of emergence of Ig/TCR within the MHC or proto-MHC.

Indexed as

AntibodiesMajor Histocompatibility ComplexSharksAmino Acid SequenceEvolution, MolecularGene ExpressionImmunoglobulin GLiverMammalsOrgan SpecificityPhylogenySequence AlignmentAntibodiesImmunoglobulin G

Identifiers

PMID37540118
PMCPMC10530332
OpenAlexW4385564180

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.