Evidence map›Paper›PMID 37538847›Full record

ArticleFrontiers in microbiology2023

Novel computational and drug design strategies for inhibition of monkeypox virus and

Shopnil Akash, Showkat Ahmad Mir, Sajjat Mahmood, Saddam Hossain, Md Rezaul Islam, Nobendu Mukerjee, Binata Nayak, Hiba-Allah Nafidi, Yousef A Bin Jardan, Amare Mekonnen and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 9 institutions in 6 countries.

Shopnil AkashDepartment of Pharmacy, Faculty of Allied Health Sciences, Daffodil International, University, Dhaka, Bangladesh.
Showkat Ahmad MirSchool of Life Sciences, Sambalpur University, Sambalpur, Odisha, India.
Sajjat MahmoodDepartment of Microbiology, Jagannath University, Dhaka, Bangladesh.
Saddam HossainDepartment of Biomedical Engineering, Faculty of Engineering and Technology, Islamic University, Kushtia, Bangladesh.
Md Rezaul IslamDepartment of Pharmacy, Faculty of Allied Health Sciences, Daffodil International, University, Dhaka, Bangladesh.
Nobendu MukerjeeDepartment of Microbiology, West Bengal State University, Kolkata, West Bengal, India.
Binata NayakSchool of Life Sciences, Sambalpur University, Sambalpur, Odisha, India.
Hiba-Allah NafidiDepartment of Food Science, Faculty of Agricultural and Food Sciences, Laval University, Quebec City, QC, Canada.
Yousef A Bin JardanDepartment of Pharmaceutics, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia.
Amare MekonnenDepartment of Biology, Bahir Dar University, Bahir Dar, Ethiopia.
Mohammed BourhiaDepartment of Chemistry and Biochemistry, Faculty of Medicine and Pharmacy, Ibn Zohr University, Laayoune, Morocco.
Daffodil International University · BDSambalpur University · INBahir Dar University · ETIslamic University · BDJagannath University · BDKing Saud University · SAUniversité Ibn Zohr · MAUniversité Laval · CAWest Bengal State University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: The alarming increase in tick-borne pathogens such as human Methods and materials: In this study, a series of natural plant-based biomolecules were subjected to in-depth computational investigation to find the most potent inhibitors targeting major pathogenic proteins responsible for the diseases caused by these two pathogens. Results: Among them, most of the selected natural compounds are predicted to bind tightly to the targeted proteins that are crucial for the replication of these novel pathogens. Moreover, all the molecules have outstanding ADMET properties such as high aqueous solubility, a higher human gastrointestinal absorption rate, and a lack of any carcinogenic or hepatotoxic effects; most of them followed Lipinski's rule. Finally, the stability of the compounds was determined by molecular dynamics simulations (MDs) for 100 ns. During MDs, we observed that the mentioned compounds have exceptional stability against selected pathogens. Conclusion: These advanced computational strategies reported that 11 lead compounds, including dieckol and amentoflavone, exhibited high potency, excellent drug-like properties, and no toxicity. These compounds demonstrated strong binding affinities to the target enzymes, especially dieckol, which displayed superior stability during molecular dynamics simulations. The MM/PBSA method confirmed the favorable binding energies of amentoflavone and dieckol. However, further

Indexed as

admetBabesia microtiDFTdrug-likenessmolecular dockingmolecular dynamics simulationsmonkeypox virus

Identifiers

PMID37538847
PMCPMC10394520
OpenAlexW4384823369

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.