Evidence map›Paper›PMID 37538038›Full record

ArticleMedical physics2023

Unsupervised deep learning framework for data-driven gating in positron emission tomography.

Tiantian Li, Zhaoheng Xie, Wenyuan Qi, Evren Asma, Jinyi Qi

Abstract read
In one paragraph

Article in Medical physics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tiantian LiDepartment of Biomedical Engineering, University of California - Davis, Davis, California, USA.
Zhaoheng XieDepartment of Biomedical Engineering, University of California - Davis, Davis, California, USA.
Wenyuan QiCanon Medical Research USA, Inc., Vernon Hills, Illinois, USA.
Evren AsmaCanon Medical Research USA, Inc., Vernon Hills, Illinois, USA.
Jinyi QiDepartment of Biomedical Engineering, University of California - Davis, Davis, California, USA.

Funding

TRD3: Data Analytics and Intelligent Systems (AI-ML-DL-Visualization)P41EB032840 · NIBIB · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Griffith R. Harsh · 2022 to 2026
$6.7M
Optimization of PET ImagingR01EB000194 · NIBIB · UNIVERSITY OF CALIFORNIA DAVIS · PI QI, JINYI · 2003 to 2018
$3.7M
NIBIB NIH HHS P41 EB032840NIBIB NIH HHS R01 EB000194
6 · The paper itself

Abstract

backgroundPhysiological motion, such as respiratory motion, has become a limiting factor in the spatial resolution of positron emission tomography (PET) imaging as the resolution of PET detectors continue to improve. Motion-induced misregistration between PET and CT images can also cause attenuation correction artifacts. Respiratory gating can be used to freeze the motion and to reduce motion induced artifacts. PURPOSE: In this study, we propose a robust data-driven approach using an unsupervised deep clustering network that employs an autoencoder (AE) to extract latent features for respiratory gating.

methodsWe first divide list-mode PET data into short-time frames. The short-time frame images are reconstructed without attenuation, scatter, or randoms correction to avoid attenuation mismatch artifacts and to reduce image reconstruction time. The deep AE is then trained using reconstructed short-time frame images to extract latent features for respiratory gating. No additional data are required for the AE training. K-means clustering is subsequently used to perform respiratory gating based on the latent features extracted by the deep AE. The effectiveness of our proposed Deep Clustering method was evaluated using physical phantom and real patient datasets. The performance was compared against phase gating based on an external signal (External) and image based principal component analysis (PCA) with K-means clustering (Image PCA).

resultsThe proposed method produced gated images with higher contrast and sharper myocardium boundaries than those obtained using the External gating method and Image PCA. Quantitatively, the gated images generated by the proposed Deep Clustering method showed larger center of mass (COM) displacement and higher lesion contrast than those obtained using the other two methods.

conclusionsThe effectiveness of our proposed method was validated using physical phantom and real patient data. The results showed our proposed framework could provide superior gating than the conventional External method and Image PCA.

Indexed as

Deep LearningImage Processing, Computer-AssistedPositron-Emission TomographyRespiratory-Gated Imaging TechniquesUnsupervised Machine LearningCluster AnalysisHumansPhantoms, Imagingdata-drivendeep clusteringrespiratory gatingunsupervised learning

Identifiers

PMID37538038
PMCPMC10592231

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.