ArticleEnvironmental microbiome2023
Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome.
Article in Environmental microbiome, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed, 54 citations in OpenAlex.
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- Egg microbiome of the yellow-spotted Amazon river turtle (Podocnemis unifilis) modulates fusariosis fungal infection and hatching success.Communications biology · 2026Article
- Bacterial inoculation drives microbiome-mediated resistance to a soil-borne pathogen in wheat.NPJ biofilms and microbiomes · 2026Article
- Legacy effects of cover cropping and crop phase on soybean health and associated rhizosphere microbiome in corn-soybean rotation.Environmental microbiome · 2026Article
- Characterization ofJournal of fungi (Basel, Switzerland) · 2026Article
- Different fungal and bacterial pathogen infections alter the grapevine microbiome and phenolic profiles in a localized and specific manner.Frontiers in plant science · 2026Article
- Mycotoxins and plant diseases in a changing climate: from pathogen ecology to smart surveillance and mitigation strategies.Frontiers in fungal biology · 2026Review
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- The Role of Coffee Microbiomes in Pathogen Resistance Across Varieties and Ecological Niches.Microorganisms · 2025Article
- metaTP: a meta-transcriptome data analysis pipeline with integrated automated workflows.BMC bioinformatics · 2025Article
- Optimization of Mapping Tools and Investigation of Ribosomal RNA Influence for Data-Driven Gene Expression Analysis in Complex Microbiomes.Microorganisms · 2025Article
- Review
- Importance, structure, cultivability, and resilience of the bacterial microbiota during infection of laboratory-grown Haematococcus spp. by the blastocladialean pathogen Paraphysoderma sedebokerense: evidence for a domesticated microbiota and its potential for biocontrol.FEMS microbiology ecology · 2025Article
- Article
- Metabolism of hemicelluloses by root-associated Bacteroidota species.The ISME journal · 2025Article
- Soybean green manure intercropping improves citrus quality by improving soil quality and altering microbial communities.Frontiers in plant science · 2025Article
- The rhizosphere of Phaseolus vulgaris L. cultivars hosts a similar bacterial community in local agricultural soils.PloS one · 2025Article
- Beyond correlation: Understanding the causal link between microbiome and plant health.Heliyon · 2024Review
Corrections and comments
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Authors and funding
9 authors at 5 institutions in 3 countries.
Funding
Abstract
backgroundPlants rely on their root microbiome as the first line of defense against soil-borne fungal pathogens. The abundance and activities of beneficial root microbial taxa at the time prior to and during fungal infection are key to their protective success. If and how invading fungal root pathogens can disrupt microbiome assembly and gene expression is still largely unknown. Here, we investigated the impact of the fungal pathogen Fusarium oxysporum (fox) on the assembly of rhizosphere and endosphere microbiomes of a fox-susceptible and fox-resistant common bean cultivar.
resultsIntegration of 16S-amplicon, shotgun metagenome as well as metatranscriptome sequencing with community ecology analysis showed that fox infections significantly changed the composition and gene expression of the root microbiome in a cultivar-dependent manner. More specifically, fox infection led to increased microbial diversity, network complexity, and a higher proportion of the genera Flavobacterium, Bacillus, and Dyadobacter in the rhizosphere of the fox-resistant cultivar compared to the fox-susceptible cultivar. In the endosphere, root infection also led to changes in community assembly, with a higher abundance of the genera Sinorhizobium and Ensifer in the fox-resistant cultivar. Metagenome and metatranscriptome analyses further revealed the enrichment of terpene biosynthesis genes with a potential role in pathogen suppression in the fox-resistant cultivar upon fungal pathogen invasion.
conclusionCollectively, these results revealed a cultivar-dependent enrichment of specific bacterial genera and the activation of putative disease-suppressive functions in the rhizosphere and endosphere microbiome of common bean under siege.
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