Evidence map›Paper›PMID 37537169›Full record

ArticleNature communications2023

Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome.

Savannah M Seely, Narayan P Parajuli, Arindam De Tarafder, Xueliang Ge, Suparna Sanyal, Matthieu G Gagnon

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Ribosome hibernation in zinc-starvedMicrobiology spectrum · 2026
    Article
  3. Article
  4. Article
  5. Essential fatty acids disrupt the mycolic acid-rich cell envelope of clinicalFrontiers in cellular and infection microbiology · 2026
    Article
  6. Article
  7. Article
  8. Review
  9. Antibiotics againstPharmaceutics · 2024
    Article
  10. Hibernating ribosomes as drug targets?Frontiers in microbiology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Savannah M Seely *Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, 77555, USA.ORCID http://orcid.org/0000-0001-7354-8913
Narayan P Parajuli *Department of Cell and Molecular Biology, Biomedical Center, Uppsala University, SE-75124, Uppsala, Sweden.ORCID http://orcid.org/0000-0002-3228-9908
Arindam De TarafderDepartment of Cell and Molecular Biology, Biomedical Center, Uppsala University, SE-75124, Uppsala, Sweden.ORCID http://orcid.org/0000-0002-4326-5354
Xueliang GeDepartment of Cell and Molecular Biology, Biomedical Center, Uppsala University, SE-75124, Uppsala, Sweden.ORCID http://orcid.org/0000-0001-7954-3195
Suparna SanyalDepartment of Cell and Molecular Biology, Biomedical Center, Uppsala University, SE-75124, Uppsala, Sweden. suparna.sanyal@icm.uu.se.ORCID http://orcid.org/0000-0002-7124-792X
Matthieu G GagnonDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, 77555, USA. magagnon@utmb.edu.ORCID http://orcid.org/0000-0003-4516-604X
Uppsala University · SEThe University of Texas Medical Branch at Galveston · US

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
HOUSTON AREA MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008280 · NIGMS · RICE UNIVERSITY · PI WENSEL, THEODORE G · 1988 to 2023
$8.0M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Structural Basis for the Allosteric Mechanisms Regulating Ribosome FunctionR01GM136936 · NIGMS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI GAGNON, MATTHIEU · 2020 to 2024
$1.8M
NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R01 GM136936NIGMS NIH HHS T32 GM008280NIH HHS S10 OD021527
6 · The paper itself

Abstract

Aminoglycosides are a class of antibiotics that bind to ribosomal RNA and exert pleiotropic effects on ribosome function. Amikacin, the semisynthetic derivative of kanamycin, is commonly used for treating severe infections with multidrug-resistant, aerobic Gram-negative bacteria. Amikacin carries the 4-amino-2-hydroxy butyrate (AHB) moiety at the N

Indexed as

AmikacinAnti-Bacterial AgentsKanamycinModels, MolecularRibosomesRNA, TransferAmikacinAnti-Bacterial AgentsKanamycinRNA, Transfer

Identifiers

PMID37537169
PMCPMC10400623
OpenAlexW4385554796

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.