Evidence map›Paper›PMID 37534185›Full record

ArticleiScience2023

Dynamic DNA methylation modification in peanut seed development.

Zhongfeng Li, Qian Liu, Kai Zhao, Di Cao, Zenghui Cao, Kunkun Zhao, Qian Ma, Gaidan Zhai, Sasa Hu, Zhan Li and 8 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
7.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 1 country.

Zhongfeng LiCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Qian LiuNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.
Kai ZhaoCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Di CaoCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Zenghui CaoCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Kunkun ZhaoCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Qian MaCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Gaidan ZhaiCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Sasa HuCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Zhan LiCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Kuopeng WangCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Fangping GongCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Xingli MaCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Xingguo ZhangCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Rui RenCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Ding QiuCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Yu ZhaoNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China.
Dongmei YinCollege of Agronomy, Henan Agricultural University, Zhengzhou 450046, Henan Province, China.
Henan Agricultural University · CNHuazhong Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytosine methylation is an important epigenetic modification involved in regulation of plant development. However, the epigenetic mechanisms governing peanut seed development remain unclear. Herein, we generated DNA methylation profiles of developmental seeds of peanut H2014 and its smaller seed mutant H1314 at 15 and 60 days after pegging (DAP, S1, S4). Accompanying seed development, globally elevated methylation was observed in both lines. The mutant had a higher methylation level of 31.1% than wild type at S4, and 27.1-35.9% of the differentially methylated regions (DMRs) between the two lines were distributed in promoter or genic regions at both stages. Integrated methylome and transcriptome analysis revealed important methylation variations closely associated with seed development. Furthermore, some genes showed significantly negative correlation of expression with the methylation level within promoter or gene body. The results provide insights into the roles of DNA methylation in peanut seed development.

Indexed as

EpigeneticsPlant developmentTranscriptomics

Identifiers

PMID37534185
PMCPMC10391728
OpenAlexW4379618377

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.