Evidence map›Paper›PMID 37533645›Full record

ArticleCell reports methods2023

Enzymatic assay for UDP-GlcNAc and its application in the parallel assessment of substrate availability and protein O-GlcNAcylation.

Marc Sunden, Divya Upadhyay, Rishi Banerjee, Nina Sipari, Vineta Fellman, Jukka Kallijärvi, Janne Purhonen

Open access · goldAbstract read
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Article in Cell reports methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Marc SundenFolkhälsan Research Center, Helsinki, Finland.
Divya UpadhyayFolkhälsan Research Center, Helsinki, Finland.
Rishi BanerjeeFolkhälsan Research Center, Helsinki, Finland.
Nina SipariViikki Metabolomics Unit, University of Helsinki, Helsinki, Finland.
Vineta FellmanFolkhälsan Research Center, Helsinki, Finland.
Jukka KallijärviFolkhälsan Research Center, Helsinki, Finland.
Janne PurhonenFolkhälsan Research Center, Helsinki, Finland.
Folkhälsans Forskningscentrum · FIUniversity of Helsinki · FIHelsinki Children's Hospital · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

O-linked N-acetylglucosaminylation (O-GlcNAcylation) is a ubiquitous and dynamic non-canonical glycosylation of intracellular proteins. Several branches of metabolism converge at the hexosamine biosynthetic pathway (HBP) to produce the substrate for protein O-GlcNAcylation, the uridine diphosphate N-acetylglucosamine (UDP-GlcNAc). Availability of UDP-GlcNAc is considered a key regulator of O-GlcNAcylation. Yet UDP-GlcNAc concentrations are rarely reported in studies exploring the HBP and O-GlcNAcylation, most likely because the methods to measure it are restricted to specialized chromatographic procedures. Here, we introduce an enzymatic method to quantify cellular and tissue UDP-GlcNAc. The method is based on O-GlcNAcylation of a substrate peptide by O-linked N-acetylglucosamine transferase (OGT) and subsequent immunodetection of the modification. The assay can be performed in dot-blot or microplate format. We apply it to quantify UDP-GlcNAc concentrations in several mouse tissues and cell lines. Furthermore, we show how changes in UDP-GlcNAc levels correlate with O-GlcNAcylation and the expression of OGT and O-GlcNAcase (OGA).

Indexed as

Enzyme AssaysProteinsAnimalsGlycosylationMiceUridine DiphosphateProteinsUridine DiphosphateGlcNAc salvage pathwayhexosamine biosynthetic pathwaymicroplate assay for UDP-GlcNAcnucleotide sugarsOGAO-GlcNAcaseOGTO-linked N-acetylglucosamine transferaseprotein O-GlcNAcylation homeostasis

Identifiers

PMID37533645
PMCPMC10391344
OpenAlexW4382393865

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.