Evidence map›Paper›PMID 37533008›Full record

ArticleBMC genomics2023

The retinoic acid response is a minor component of the cardiac phenotype in H9c2 myoblast differentiation.

Carlos Campero-Basaldua, Jessica Herrera-Gamboa, Judith Bernal-Ramírez, Silvia Lopez-Moran, Luis-Alberto Luévano-Martínez, Hugo Alves-Figueiredo, Guillermo Guerrero, Gerardo García-Rivas, Víctor Treviño

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Carlos Campero-BasalduaTecnologico de Monterrey, Escuela de Medicina y Ciencias de la SaludCátedra de Bioinformática, Ave. Morones Prieto 3000, Colonia Los Doctores, Monterrey, Nuevo León, 64710, Mexico.
Jessica Herrera-GamboaTecnologico de Monterrey, Escuela de Medicina y Ciencias de la SaludCátedra de Bioinformática, Ave. Morones Prieto 3000, Colonia Los Doctores, Monterrey, Nuevo León, 64710, Mexico.
Judith Bernal-RamírezTecnologico de Monterrey, Escuela de Medicina y Ciencias de la SaludCátedra de Cardiología y Medicina Vascular, Hospital Zambrano Hellion, San Pedro Garza García, P.C. 66278, Monterrey, Nuevo León, 64710, Mexico.
Silvia Lopez-MoranTecnologico de Monterrey, Escuela de Medicina y Ciencias de la SaludCátedra de Cardiología y Medicina Vascular, Hospital Zambrano Hellion, San Pedro Garza García, P.C. 66278, Monterrey, Nuevo León, 64710, Mexico.
Luis-Alberto Luévano-MartínezTecnologico de Monterrey, Escuela de Medicina y Ciencias de la SaludCátedra de Cardiología y Medicina Vascular, Hospital Zambrano Hellion, San Pedro Garza García, P.C. 66278, Monterrey, Nuevo León, 64710, Mexico.
Hugo Alves-FigueiredoTecnologico de Monterrey, Escuela de Medicina y Ciencias de la SaludCátedra de Cardiología y Medicina Vascular, Hospital Zambrano Hellion, San Pedro Garza García, P.C. 66278, Monterrey, Nuevo León, 64710, Mexico.
Guillermo GuerreroTecnologico de Monterrey, Escuela de Medicina y Ciencias de la SaludCátedra de Bioinformática, Ave. Morones Prieto 3000, Colonia Los Doctores, Monterrey, Nuevo León, 64710, Mexico.
Gerardo García-RivasTecnologico de Monterrey, Escuela de Medicina y Ciencias de la SaludCátedra de Cardiología y Medicina Vascular, Hospital Zambrano Hellion, San Pedro Garza García, P.C. 66278, Monterrey, Nuevo León, 64710, Mexico. gdejesus@tec.mx.
Víctor TreviñoTecnologico de Monterrey, Escuela de Medicina y Ciencias de la SaludCátedra de Bioinformática, Ave. Morones Prieto 3000, Colonia Los Doctores, Monterrey, Nuevo León, 64710, Mexico. vtrevino@tec.mx.
Tecnológico de Monterrey · MXHospital Zambrano Hellion · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The H9c2 myoblast cell line, isolated from the left ventricular tissue of rat, is currently used in vitro as a mimetic for skeletal and cardiac muscle due to its biochemical, morphological, and electrical/hormonal signaling properties. During culture, H9c2 cells acquire a myotube phenotype, where a critical component is the inclusion of retinoic acid (RA). The results from some authors on H9c2 suggested that thousands of genes respond to RA stimuli, while others report hundreds of genes responding to RA over different cell types. In this article, using a more appropriate experimental design, we first confirm the H9c2 cardiac phenotype with and without RA and report transcriptomic and physiological changes regarding calcium handling, bioenergetics, and other biological concepts. Interestingly, of the 2360 genes showing a transcriptional change, 622 genes were statistically associated with the RA response. Of these genes, only 305 were RA-specific, and the rest also showed a culture-time component. Thus, the major expression changes (from 74 to 87%) were indeed due to culture conditions over time. Unexpectedly, only a few components of the retinol pathway in KEGG responded to RA. Our results show the role of RA in the H9c2 cultures impacting the interpretation using H9c2 as an in vitro model.

Indexed as

MyocardiumTretinoinAnimalsCell DifferentiationMyoblastsPhenotypeRatsTretinoinEpigenomicH9c2 cell lineMyoblastMyotubeTranscriptomic

Identifiers

PMID37533008
PMCPMC10394869
OpenAlexW4385505871

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.