Evidence map›Paper›PMID 37532915›Full record

ReviewNature reviews. Genetics2023

Regulation of the RNA polymerase II pre-initiation complex by its associated coactivators.

Sohail Malik, Robert G Roeder

Open access · greenAbstract readReview
In one paragraph

Review in Nature reviews. Genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
11.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 77 citations in OpenAlex.

  1. The molecular basis of transcription initiation by RNA polymerase II.Nature reviews. Molecular cell biology · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. KAS-CUT&Tag for direct mapping of transcription bubbles.bioRxiv : the preprint server for biology · 2026
    Article
  12. Review
  13. Article
  14. Direct roles of long non-coding RNAs in transcription activation.Nature structural & molecular biology · 2026
    Review
  15. Maternal IntS11 primes embryonic totipotency by organizing early zygotic transcription initiation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  16. Article
  17. Article
  18. Promoter proximal pausing of RNA polymerase across evolution.Nature structural & molecular biology · 2026
    Article
  19. Review
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Sohail MalikLaboratory of Biochemistry & Molecular Biology, The Rockefeller University, New York, NY, USA. maliks@rockefeller.edu.ORCID 0000-0001-8907-1750
Robert G RoederLaboratory of Biochemistry & Molecular Biology, The Rockefeller University, New York, NY, USA.ORCID 0000-0003-3865-8572
Rockefeller University · US

Funding

Functions and mechanisms of transcriptional coactivator OCA-B in B cell development and lymphomagenesisR01AI148387 · NIAID · ROCKEFELLER UNIVERSITY · PI ROEDER, ROBERT G · 2020 to 2024
$3.7M
Molecular mechanisms of estrogen receptor-dependent transcription regulationR01CA234575 · NCI · ROCKEFELLER UNIVERSITY · PI ROEDER, ROBERT G · 2019 to 2023
$3.1M
Mechanistic studies of transcription initiation and elongation functions of an RNA polymerase II variant, Pol II(G), that is implicated in development and cancerR01CA273709 · NCI · ROCKEFELLER UNIVERSITY · PI ROBERT G ROEDER · 2022 to 2026
$1.9M
NCI NIH HHS R01 CA234575NCI NIH HHS R01 CA273709NIAID NIH HHS R01 AI148387
6 · The paper itself

Abstract

The RNA polymerase II (Pol II) pre-initiation complex (PIC) is a critical node in eukaryotic transcription regulation, and its formation is the major rate-limiting step in transcriptional activation. Diverse cellular signals borne by transcriptional activators converge on this large, multiprotein assembly and are transduced via intermediary factors termed coactivators. Cryogenic electron microscopy, multi-omics and single-molecule approaches have recently offered unprecedented insights into both the structure and cellular functions of the PIC and two key PIC-associated coactivators, Mediator and TFIID. Here, we review advances in our understanding of how Mediator and TFIID interact with activators and affect PIC formation and function. We also discuss how their functions are influenced by their chromatin environment and selected cofactors. We consider how, through its multifarious interactions and functionalities, a Mediator-containing and TFIID-containing PIC can yield an integrated signal processing system with the flexibility to determine the unique temporal and spatial expression pattern of a given gene.

Indexed as

RNA Polymerase IITranscription Factor TFIIDTranscription Initiation, GeneticAnimalsChromatinGene Expression RegulationHumansMultiprotein ComplexesChromatinMultiprotein ComplexesRNA Polymerase IITranscription Factor TFIID

Identifiers

PMID37532915
PMCPMC11088444
OpenAlexW4385493137

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.