Evidence map›Paper›PMID 37529279›Full record

ArticleQRB discovery2022

Amyloid-like Hfq interaction with single-stranded DNA: involvement in recombination and replication in

Krzysztof Kubiak, Frank Wien, Indresh Yadav, Nykola C Jones, Søren Vrønning Hoffmann, Eric Le Cam, Antoine Cossa, Frederic Geinguenaud, Johan R C van der Maarel, Grzegorz Węgrzyn and 1 more

Abstract read
In one paragraph

Article in QRB discovery, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Couette Flow Linear Dichroism Spectroscopy.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
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  10. Review
  11. Review
  12. Article
  13. Article
  14. Interactions and Insertion ofInternational journal of molecular sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Krzysztof KubiakDepartment of Molecular Biology, University of Gdansk, Wita Stwosza 59, 80-308 Gdansk, Poland.ORCID https://orcid.org/0000-0002-6085-7570
Frank WienDISCO Beamline, Synchrotron SOLEIL, 91192 Gif-sur-Yvette, France.ORCID https://orcid.org/0000-0002-0752-8735
Indresh YadavDepartment of Physics, National University of Singapore, Singapore 117542, Singapore.
Nykola C JonesISA, Department of Physics and Astronomy, Aarhus University, 8000 Aarhus C, Denmark.ORCID https://orcid.org/0000-0002-4081-6405
Søren Vrønning HoffmannISA, Department of Physics and Astronomy, Aarhus University, 8000 Aarhus C, Denmark.ORCID https://orcid.org/0000-0002-8018-5433
Eric Le CamUMR9019-CNRS, Genome Integrity and Cancer, Université Paris-Saclay, Gustave Roussy, F-94805 Villejuif Cedex, France.
Antoine CossaLaboratoire Léon Brillouin, Université Paris Saclay, CEA, LLB, 91191 Gif-sur-Yvette, France.ORCID https://orcid.org/0000-0002-8073-8704
Frederic GeinguenaudPlateforme CNanoMat and Inserm, U1148, Laboratory for Vascular Translational Science, UFR SMBH, Université Paris 13, Sorbonne Paris Cité, F-93017, Bobigny, France.ORCID https://orcid.org/0000-0002-7688-0177
Johan R C van der MaarelDepartment of Physics, National University of Singapore, Singapore 117542, Singapore.ORCID https://orcid.org/0000-0001-5560-0298
Grzegorz WęgrzynDepartment of Molecular Biology, University of Gdansk, Wita Stwosza 59, 80-308 Gdansk, Poland.
Véronique ArluisonLaboratoire Léon Brillouin, Université Paris Saclay, CEA, LLB, 91191 Gif-sur-Yvette, France.ORCID https://orcid.org/0000-0003-4056-7282

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interactions between proteins and single-stranded DNA (ssDNA) are crucial for many fundamental biological processes, including DNA replication and genetic recombination. Thus, understanding detailed mechanisms of these interactions is necessary to uncover regulatory rules occurring in all living cells. The RNA-binding Hfq is a pleiotropic bacterial regulator that mediates many aspects of nucleic acid metabolism. The protein notably mediates mRNA stability and translation efficiency by using stress-related small regulatory RNA as cofactors. In addition, Hfq helps to compact double-stranded DNA. In this paper, we focused on the action of Hfq on ssDNA. A combination of experimental methodologies, including spectroscopy and molecular imaging, has been used to probe the interactions of Hfq and its amyloid C-terminal region with ssDNA. Our analysis revealed that Hfq binds to ssDNA. Moreover, we demonstrate for the first time that Hfq drastically changes the structure and helical parameters of ssDNA, mainly due to its C-terminal amyloid-like domain. The formation of the nucleoprotein complexes between Hfq and ssDNA unveils important implications for DNA replication and recombination.

Indexed as

bacterial amyloidHfqnon-coding RNAnucleoid associated proteinsingle-stranded DNA-binding proteinSm-like protein

Identifiers

PMID37529279
PMCPMC10392684

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.