Evidence map›Paper›PMID 37529114›Full record

ArticleTurkish journal of biology = Turk biyoloji dergisi2023

Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source "

Necati Atalay, Enver Kamil Akcan, Mehmet Gül, Esra Ayan, Ebru Destan, Fatma Betül Ertem, Nurettin Tokay, Barış Çakilkaya, Zeliş Nergiz, Gözde Karakadioğlu and 37 more

Abstract read
In one paragraph

Article in Turkish journal of biology = Turk biyoloji dergisi, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
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  4. Temperature induces a shift from insulin dihexamer to hexamer in collective dynamics.Protein science : a publication of the Protein Society · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

47 authors.

Necati AtalayDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-5372-9896
Enver Kamil AkcanDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0003-2682-6241
Mehmet GülDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0001-5513-1866
Esra AyanDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0001-7906-4426
Ebru DestanDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-5292-0808
Fatma Betül ErtemDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-2144-989X
Nurettin TokayDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0003-4934-4173
Barış ÇakilkayaDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0001-6252-5943
Zeliş NergizDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0003-2394-7224
Gözde KarakadioğluDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0003-4946-4300
Abdullah KepceoğluDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-4743-5517
İlkin YapiciDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0001-9686-4943
Bilge TosunDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0001-5131-6361
Nilüfer BaldirDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-8829-3287
Günseli YildirimDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0003-0933-3664
J Austin JohnsonDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-8553-2465
Ömür GüvenDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0003-2388-5297
Alaleh ShafieiDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0003-2424-9583
Nazlı Eylül ArslanDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-5230-0916
Merve YilmazDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0003-3346-2781
Cahine KulakmanDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0003-1497-0190
Seyide Seda PaydosDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0003-3148-6376
Zeynep Sena ÇinalDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-5267-9890
Kardelen ŞabanoğluDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0003-0319-4595
Ayşegül PazarçevirenDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-9161-300X
Ayşenur YilmazDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-3418-6099
Başak CanbayDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0001-8025-7532
Bengisu AşciDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-5098-3725
Esra KartalDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-3438-6736
Serra TavliDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0001-9362-8013
Mehmet ÇalisekiTurkish Accelerator and Radiation Laboratory (TARLA), Ankara University, Ankara, Türkiye.ORCID https://orcid.org/0000-0003-4190-3962
Günce GöçTurkish Accelerator and Radiation Laboratory (TARLA), Ankara University, Ankara, Türkiye.ORCID https://orcid.org/0000-0002-1963-8317
Arif MermerExperimental Medicine Application & Research Center, University of Health Sciences Türkiye, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-4789-7180
Gamze YeşilayExperimental Medicine Application & Research Center, University of Health Sciences Türkiye, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-3375-8956
Sevde AltuntaşExperimental Medicine Application & Research Center, University of Health Sciences Türkiye, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-4803-9479
Hiroshi TateishiMedicinal and Biological Chemistry Science Farm Joint Research Laboratory, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan.ORCID https://orcid.org/0000-0003-1225-0720
Masami OtsukaMedicinal and Biological Chemistry Science Farm Joint Research Laboratory, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan.ORCID https://orcid.org/0000-0002-2968-3939
Mikako FujitaMedicinal and Biological Chemistry Science Farm Joint Research Laboratory, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan.ORCID https://orcid.org/0000-0001-6705-4052
Şaban TekinExperimental Medicine Application & Research Center, University of Health Sciences Türkiye, İstanbul, Türkiye.ORCID https://orcid.org/0000-0003-2641-6293
Halilibrahim ÇiftçiDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-9796-7669
Serdar DurdağiDepartment of Biophysics, School of Medicine, Bahçeşehir University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-0426-0905
Gizem Dinler DoğanayDepartment of Molecular Biology and Genetics, Faculty of Science and Letters, İstanbul Technical University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-3586-1287
Ezgi Karacaİzmir Biomedicine and Genome Center, İzmir, Türkiye.ORCID https://orcid.org/0000-0002-4926-7991
Burcu Kaplan TürközDepartment of Food Engineering, Faculty of Engineering, Ege University, İzmir, Türkiye.ORCID https://orcid.org/0000-0003-3040-3321
Burak Veli KabasakalTurkish Accelerator and Radiation Laboratory (TARLA), Ankara University, Ankara, Türkiye.ORCID https://orcid.org/0000-0003-3001-9282
Ahmet KatiExperimental Medicine Application & Research Center, University of Health Sciences Türkiye, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-9903-634X
Hasan DemirciDepartment of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.ORCID https://orcid.org/0000-0002-9135-5397

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

X-ray crystallography is a robust and powerful structural biology technique that provides high-resolution atomic structures of biomacromolecules. Scientists use this technique to unravel mechanistic and structural details of biological macromolecules (e.g., proteins, nucleic acids, protein complexes, protein-nucleic acid complexes, or large biological compartments). Since its inception, single-crystal cryocrystallography has never been performed in Türkiye due to the lack of a single-crystal X-ray diffractometer. The X-ray diffraction facility recently established at the University of Health Sciences, İstanbul, Türkiye will enable Turkish and international researchers to easily perform high-resolution structural analysis of biomacromolecules from single crystals. Here, we describe the technical and practical outlook of a state-of-the-art home-source X-ray, using lysozyme as a model protein. The methods and practice described in this article can be applied to any biological sample for structural studies. Therefore, this article will be a valuable practical guide from sample preparation to data analysis.

Indexed as

atomic resolutiondrug developmentdrug repurposinglight sourcestructural biologystructural dynamicsX-ray crystallography

Identifiers

PMID37529114
PMCPMC10387866

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.