Evidence map›Paper›PMID 37527660›Full record

ArticleCell2023

Repeat polymorphisms underlie top genetic risk loci for glaucoma and colorectal cancer.

Ronen E Mukamel, Robert E Handsaker, Maxwell A Sherman, Alison R Barton, Margaux L A Hujoel, Steven A McCarroll, Po-Ru Loh

Open access · hybridAbstract read
In one paragraph

Article in Cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  3. Article
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  8. Article
  9. Review
  10. Exome-Wide Analysis Identifies a RareKidney international reports · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Structure of a polymorphic repeat at theProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. Review
  18. Article
  19. Structure of a polymorphic repeat at themedRxiv : the preprint server for health sciences · 2025
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Ronen E MukamelDivision of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA; Center for Data Sciences, Brigham and Women's Hospital, Boston, MA, USA; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA. Electronic address: rmukamel@broadinstitute.org.
Robert E HandsakerProgram in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA; Department of Genetics, Harvard Medical School, Boston, MA, USA. Electronic address: handsake@broadinstitute.org.
Maxwell A ShermanDivision of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA; Center for Data Sciences, Brigham and Women's Hospital, Boston, MA, USA; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.
Alison R BartonDivision of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA; Center for Data Sciences, Brigham and Women's Hospital, Boston, MA, USA; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA; Bioinformatics and Integrative Genomics Program, Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
Margaux L A HujoelDivision of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA; Center for Data Sciences, Brigham and Women's Hospital, Boston, MA, USA; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Steven A McCarrollProgram in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA; Department of Genetics, Harvard Medical School, Boston, MA, USA. Electronic address: smccarro@broadinstitute.org.
Po-Ru LohDivision of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA; Center for Data Sciences, Brigham and Women's Hospital, Boston, MA, USA; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA. Electronic address: poruloh@broadinstitute.org.
Broad Institute · US

Funding

Training Program in Bioinformatics and Integrative GenomicsT32HG002295 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Peter J Park · 2001 to 2026
$15.8M
Structurally complex genome loci in human populations and human phenotypesR01HG006855 · NHGRI · HARVARD MEDICAL SCHOOL · PI Steven Andrew McCarroll · 2012 to 2026
$8.2M
Revealing somatic genome alterations and their clinical sequelae: Ultrasensitive computational detection of mosaic structural variantsDP2ES030554 · NIEHS · BRIGHAM AND WOMEN'S HOSPITAL · PI LOH, PO-RU · 2018 to 2018
$2.7M
Exploring the role of genomic repeats in cardiovascular disease heritabilityK25HL150334 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI MUKAMEL, RONEN · 2020 to 2024
$783k
Exploring the role of genomic copy number variation in cardiovascular disease riskF32HL160061 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI HUJOEL, MARGAUX · 2021 to 2024
$212k
Exploring the role of genetic structural variation in neuropsychiatric diseasesF31MH124393 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SHERMAN, MAXWELL AARON · 2020 to 2022
$109k
Investigating the contribution of rare coding variants to cardiovascular diseasesF31HL154537 · NHLBI · HARVARD MEDICAL SCHOOL · PI BARTON, ALISON RACHEL · 2020 to 2021
$62k
NHGRI NIH HHS R01 HG006855NHGRI NIH HHS T32 HG002295NHLBI NIH HHS F31 HL154537NHLBI NIH HHS F32 HL160061NHLBI NIH HHS K25 HL150334NIEHS NIH HHS DP2 ES030554NIMH NIH HHS F31 MH124393
6 · The paper itself

Abstract

Many regions in the human genome vary in length among individuals due to variable numbers of tandem repeats (VNTRs). To assess the phenotypic impact of VNTRs genome-wide, we applied a statistical imputation approach to estimate the lengths of 9,561 autosomal VNTR loci in 418,136 unrelated UK Biobank participants and 838 GTEx participants. Association and statistical fine-mapping analyses identified 58 VNTRs that appeared to influence a complex trait in UK Biobank, 18 of which also appeared to modulate expression or splicing of a nearby gene. Non-coding VNTRs at TMCO1 and EIF3H appeared to generate the largest known contributions of common human genetic variation to risk of glaucoma and colorectal cancer, respectively. Each of these two VNTRs associated with a >2-fold range of risk across individuals. These results reveal a substantial and previously unappreciated role of non-coding VNTRs in human health and gene regulation.

Indexed as

Calcium ChannelsColorectal NeoplasmsEukaryotic Initiation Factor-3GlaucomaMinisatellite RepeatsGenome, HumanHumansPolymorphism, GeneticCalcium ChannelsEukaryotic Initiation Factor-3TMCO1 protein, humancolorectal cancerexpression and splicing quantitative trait locigenetic associationsgenomic structural variationglaucomaGWASimputationtandem repeatvariable numbers of tandem repeatsVNTR

Identifiers

PMID37527660
PMCPMC10528368
OpenAlexW4385431265

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.