Evidence map›Paper›PMID 37527417›Full record

ArticleAnalytical chemistry2023

Dynamic Data-Independent Acquisition Mass Spectrometry with Real-Time Retrospective Alignment.

Lilian R Heil, Philip M Remes, Jesse D Canterbury, Ping Yip, William D Barshop, Christine C Wu, Michael J MacCoss

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Data-Driven Optimization of DIA Mass Spectrometry by DO-MS.bioRxiv : the preprint server for biology · 2023
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Lilian R HeilDepartment of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States.ORCID 0000-0002-9462-7327
Philip M RemesThermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134, United States.
Jesse D CanterburyThermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134, United States.
Ping YipThermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134, United States.
William D BarshopThermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134, United States.ORCID 0000-0001-9517-2339
Christine C WuDepartment of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States.
Michael J MacCossDepartment of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States.ORCID 0000-0003-1853-0256
Thermo Fisher Scientific (United States) · USUniversity of Washington · US

Funding

Project 4: Novel reagent development to enable molecular characterizationU19AG065156 · NIA · UNIVERSITY OF WASHINGTON · PI HOOFNAGLE, ANDREW N · 2020 to 2024
$15.9M
Seattle Quant: A Resource for the Skyline Software EcosystemR24GM141156 · NIGMS · UNIVERSITY OF WASHINGTON · PI Michael MacCoss · 2021 to 2026
$6.7M
NIA NIH HHS U19 AG065156NIGMS NIH HHS R24 GM141156
6 · The paper itself

Abstract

Data-independent acquisition (DIA) mass spectrometry has grown in popularity in recent years, because of the reproducibility and quantitative rigor of a systematic tandem mass spectrometry (MS/MS) sampling method. However, traditional DIA methods may spend valuable instrument time acquiring MS/MS spectra with no usable information in them, affecting sensitivity and quantitative performance. We developed a DIA strategy that dynamically adjusts the MS/MS windows during the chromatographic separation. The method focuses MS/MS acquisition on the most relevant mass range at each point in time─increasing the quantitative sensitivity by increasing the time spent on each DIA window. We demonstrate an improved lower limit of quantification, on average, without sacrificing the number of peptides detected.

Indexed as

PeptidesTandem Mass SpectrometryReproducibility of ResultsRetrospective StudiesPeptides

Identifiers

PMID37527417
PMCPMC10517878
OpenAlexW4385450504

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.