Evidence map›Paper›PMID 37526643›Full record

ArticleMicrobial genomics2023

Results of the 2020 Genomic Proficiency Test for the network of European Union Reference Laboratory for Antimicrobial Resistance assessing whole-genome-sequencing capacities.

Thea Kristensen, Lauge Holm Sørensen, Susanne Karlsmose Pedersen, Jacob Dyring Jensen, Hanne Mordhorst, Niamh Lacy-Roberts, Oksana Lukjancenko, Yan Luo, Maria Hoffmann, Rene S Hendriksen

Open access · goldAbstract read
In one paragraph

Article in Microbial genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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  3. Plants (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Thea KristensenNational Food Institute, Research Group of Genomic Epidemiology, Technical University of Denmark, Kgs. Lyngby, Denmark.
Lauge Holm SørensenNational Food Institute, Research Group of Global Capacity Building, Technical University of Denmark, Kgs. Lyngby, Denmark.
Susanne Karlsmose PedersenNational Food Institute, Research Group of Global Capacity Building, Technical University of Denmark, Kgs. Lyngby, Denmark.
Jacob Dyring JensenNational Food Institute, Research Group of Genomic Epidemiology, Technical University of Denmark, Kgs. Lyngby, Denmark.
Hanne MordhorstNational Food Institute, Research Group of Genomic Epidemiology, Technical University of Denmark, Kgs. Lyngby, Denmark.
Niamh Lacy-RobertsNational Food Institute, Research Group of Global Capacity Building, Technical University of Denmark, Kgs. Lyngby, Denmark.
Oksana LukjancenkoClinical Microbiomics, Copenhagen, Denmark.
Yan LuoCenter for Food and Safety and Applied Nutrition, US Food and Drug Administration, College Park, Maryland, USA.
Maria HoffmannCenter for Food and Safety and Applied Nutrition, US Food and Drug Administration, College Park, Maryland, USA.
Rene S HendriksenNational Food Institute, Research Group of Global Capacity Building, Technical University of Denmark, Kgs. Lyngby, Denmark.
Technical University of Denmark · DKCenter for Food Safety and Applied Nutrition · USClinical Microbiomics (Denmark) · DKUniversity of Copenhagen · DK

Funding

Department of Health
6 · The paper itself

Abstract

The global surveillance and outbreak investigation of antimicrobial resistance (AMR) is amidst a paradigm shift from traditional biology to bioinformatics. This is due to developments in whole-genome-sequencing (WGS) technologies, bioinformatics tools, and reduced costs. The increased use of WGS is accompanied by challenges such as standardization, quality control (QC), and data sharing. Thus, there is global need for inter-laboratory WGS proficiency test (PT) schemes to evaluate laboratories' capacity to produce reliable genomic data. Here, we present the results of the first iteration of the Genomic PT (GPT) organized by the Global Capacity Building Group at the Technical University of Denmark in 2020. Participating laboratories sequenced two isolates and corresponding DNA of

Indexed as

Anti-Bacterial AgentsSalmonella entericaDrug Resistance, BacterialEscherichia coliEuropean UnionGenomicsHumansAnti-Bacterial AgentsGenomic Proficiency TestPathogenic bacteriaQuality controlShort-read sequencingStatistical comparisonWhole Genome Sequencing

Identifiers

PMID37526643
PMCPMC10483428
OpenAlexW4385442612

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.