Evidence map›Paper›PMID 37526424›Full record

ArticlemBio2023

Spontaneous episodic inflammation in the intestines of mice lacking HNF4A is driven by microbiota and associated with early life microbiota alterations.

Cecelia Kelly, Jayanth Jawahar, Lauren Davey, Jeffrey I Everitt, Joseph A Galanko, Chelsea Anderson, Jonathan E Avendano, Jessica R McCann, R Balfour Sartor, Raphael H Valdivia and 1 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. The Biology ofAnnual review of microbiology · 2025
    Review
  5. Review
  6. Article
  7. Article
  8. Big lessons from the littleFrontiers in immunology · 2025
    Review
  9. The role ofFrontiers in immunology · 2025
    Review
  10. Early subclinical stages of the inflammatory bowel diseases: insights from human and animal studies.American journal of physiology. Gastrointestinal and liver physiology · 2025
    Review
  11. Pangenomic analysis identifies correlations betweenMicrobiome research reports · 2024
    Article
  12. Gut microbes
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Cecelia KellyDepartment of Molecular Genetics and Microbiology, Duke Microbiome Center, Duke University School of Medicine , Durham, North Carolina, USA.ORCID 0000-0001-6105-5492
Jayanth JawaharDepartment of Molecular Genetics and Microbiology, Duke Microbiome Center, Duke University School of Medicine , Durham, North Carolina, USA.
Lauren DaveyDepartment of Molecular Genetics and Microbiology, Duke Microbiome Center, Duke University School of Medicine , Durham, North Carolina, USA.
Jeffrey I EverittDepartment of Pathology, Research Animal Pathology Core, Duke University School of Medicine , Durham, North Carolina, USA.
Joseph A GalankoDepartment of Medicine, Center for Gastrointestinal Biology and Disease, University of North Carolina at Chapel Hill , Chapel Hill, North Carolina, USA.
Chelsea AndersonDepartment of Medicine, Center for Gastrointestinal Biology and Disease, University of North Carolina at Chapel Hill , Chapel Hill, North Carolina, USA.
Jonathan E AvendanoDepartment of Molecular Genetics and Microbiology, Duke Microbiome Center, Duke University School of Medicine , Durham, North Carolina, USA.
Jessica R McCannDepartment of Molecular Genetics and Microbiology, Duke Microbiome Center, Duke University School of Medicine , Durham, North Carolina, USA.
R Balfour SartorDepartment of Medicine, Center for Gastrointestinal Biology and Disease, University of North Carolina at Chapel Hill , Chapel Hill, North Carolina, USA.
Raphael H ValdiviaDepartment of Molecular Genetics and Microbiology, Duke Microbiome Center, Duke University School of Medicine , Durham, North Carolina, USA.
John F RawlsDepartment of Molecular Genetics and Microbiology, Duke Microbiome Center, Duke University School of Medicine , Durham, North Carolina, USA.ORCID 0000-0002-5976-5206
Duke University · USUniversity of North Carolina at Chapel Hill · US

Funding

Role of IL-10 in APC Regulation of Protective vs. Pathogenic T Cell Responses toP01DK094779 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SHEIKH, SHEHZAD Z. · 2013 to 2023
$17.9M
Mechanisms of mucin binding and acquisition by AkkermansiaR01AI142376 · NIAID · DUKE UNIVERSITY · PI Raphael H Valdivia · 2018 to 2026
$2.9M
ASSET: Advancing Secondary Science Education with Tetrahymena.R25OD010955 · OD · CORNELL UNIVERSITY · PI CLARK, THEODORE G · 2012 to 2013
$484k
HHS | National Institutes of Health (NIH) F31-DK121392HHS | National Institutes of Health (NIH) P01-DK094779HHS | National Institutes of Health (NIH) P30-DK034987HHS | National Institutes of Health (NIH) P40-OD010955NIAID NIH HHS R01 AI142376NIDDK NIH HHS P01 DK094779
6 · The paper itself

Abstract

The inflammatory bowel diseases (IBD) occur in genetically susceptible individuals who mount inappropriate immune responses to their microbiota leading to chronic intestinal inflammation. Whereas IBD clinical presentation is well described, how interactions between microbiota and host genotype impact early subclinical stages of the disease remains unclear. The transcription factor hepatocyte nuclear factor 4 alpha (HNF4A) has been associated with human IBD, and deletion of

Indexed as

ColitisHepatocyte Nuclear Factor 4Inflammatory Bowel DiseasesMicrobiotaAnimalsAnti-Bacterial AgentsHumansInflammationIntestinesMiceRNA, Ribosomal, 16SAnti-Bacterial AgentsHepatocyte Nuclear Factor 4Hnf4a protein, mouseRNA, Ribosomal, 16Sgut inflammationgut microbiomeHNF4Ainflammatory bowel diseaselongitudinal analysisNR2A1transcription factors

Identifiers

PMID37526424
PMCPMC10470520
OpenAlexW4385442546

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.