Evidence map›Paper›PMID 37526230›Full record

ReviewThe EMBO journal2023

Satellite RNAs: emerging players in subnuclear architecture and gene regulation.

Kensuke Ninomiya, Tomohiro Yamazaki, Tetsuro Hirose

Abstract readReview
In one paragraph

Review in The EMBO journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
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  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Exceptionally long-lived nuclear RNAs.Science (New York, N.Y.) · 2024
    Article
  12. Article
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Kensuke NinomiyaGraduate School of Frontier Biosciences, Osaka University, Suita, Japan.
Tomohiro YamazakiGraduate School of Frontier Biosciences, Osaka University, Suita, Japan.ORCID 0000-0003-0866-5173
Tetsuro HiroseGraduate School of Frontier Biosciences, Osaka University, Suita, Japan.ORCID 0000-0003-1068-5464

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Satellite DNA is characterized by long, tandemly repeated sequences mainly found in centromeres and pericentromeric chromosomal regions. The recent advent of telomere-to-telomere sequencing data revealed the complete sequences of satellite regions, including centromeric α-satellites and pericentromeric HSat1-3, which together comprise ~ 5.7% of the human genome. Despite possessing constitutive heterochromatin features, these regions are transcribed to produce long noncoding RNAs with highly repetitive sequences that associate with specific sets of proteins to play various regulatory roles. In certain stress or pathological conditions, satellite RNAs are induced to assemble mesoscopic membraneless organelles. Specifically, under heat stress, nuclear stress bodies (nSBs) are scaffolded by HSat3 lncRNAs, which sequester hundreds of RNA-binding proteins. Upon removal of the stressor, nSBs recruit additional regulatory proteins, including protein kinases and RNA methylases, which modify the previously sequestered nSB components. The sequential recruitment of substrates and enzymes enables nSBs to efficiently regulate the splicing of hundreds of pre-mRNAs under limited temperature conditions. This review discusses the structural features and regulatory roles of satellite RNAs in intracellular architecture and gene regulation.

Indexed as

RNA, Long NoncodingRNA, SatelliteCentromereDNA, SatelliteGene Expression RegulationHeterochromatinHumansTranscription FactorsDNA, SatelliteHeterochromatinRNA, Long NoncodingRNA, SatelliteTranscription Factorsmembraneless organellenoncoding RNAsatellite DNAstress responseT2T genome

Identifiers

PMID37526230
PMCPMC10505914

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.