Evidence map›Paper›PMID 37526156›Full record

ArticleThe Journal of chemical physics2023

MBX: A many-body energy and force calculator for data-driven many-body simulations.

Marc Riera, Christopher Knight, Ethan F Bull-Vulpe, Xuanyu Zhu, Henry Agnew, Daniel G A Smith, Andrew C Simmonett, Francesco Paesani

Abstract read
In one paragraph

Article in The Journal of chemical physics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
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  9. Uptake of NNature communications · 2022
    Article
  10. Article
  11. Fragme∩t: An Open-Source Framework for Multiscale Quantum Chemistry Based on Fragmentation.Wiley interdisciplinary reviews. Computational molecular science
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marc RieraDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, USA.ORCID 0000-0001-7939-5030
Christopher KnightArgonne National Laboratory, Computational Science Division, Lemont, Illinois 60439, USA.ORCID 0000-0001-8432-0658
Ethan F Bull-VulpeDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, USA.ORCID 0000-0002-3826-4306
Xuanyu ZhuDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, USA.ORCID 0000-0002-8425-7596
Henry AgnewDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, USA.ORCID 0000-0003-1447-6045
Daniel G A SmithMolecular Sciences Software Institute, Blacksburg, Virginia 24060, USA.ORCID 0000-0001-8626-0900
Andrew C SimmonettLaboratory of Computational Biology, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.ORCID 0000-0002-5921-9272
Francesco PaesaniDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, USA.ORCID 0000-0002-4451-1203

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many-Body eXpansion (MBX) is a C++ library that implements many-body potential energy functions (PEFs) within the "many-body energy" (MB-nrg) formalism. MB-nrg PEFs integrate an underlying polarizable model with explicit machine-learned representations of many-body interactions to achieve chemical accuracy from the gas to the condensed phases. MBX can be employed either as a stand-alone package or as an energy/force engine that can be integrated with generic software for molecular dynamics and Monte Carlo simulations. MBX is parallelized internally using Open Multi-Processing and can utilize Message Passing Interface when available in interfaced molecular simulation software. MBX enables classical and quantum molecular simulations with MB-nrg PEFs, as well as hybrid simulations that combine conventional force fields and MB-nrg PEFs, for diverse systems ranging from small gas-phase clusters to aqueous solutions and molecular fluids to biomolecular systems and metal-organic frameworks.

Identifiers

PMID37526156
PMCPMC10550339

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.