Evidence map›Paper›PMID 37523564›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

SARS-CoV-2 mouse adaptation selects virulence mutations that cause TNF-driven age-dependent severe disease with human correlates.

Stefanie M Bader, James P Cooney, Dylan Sheerin, George Taiaroa, Leigh Harty, Kathryn C Davidson, Liana Mackiewicz, Merle Dayton, Stephen Wilcox, Lachlan Whitehead and 14 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

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  17. CD4Science advances · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Stefanie M BaderThe Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.ORCID 0000-0002-7901-9833
James P CooneyThe Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.ORCID 0000-0003-3680-4644
Dylan SheerinThe Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.
George TaiaroaVictorian Infectious Diseases Reference Laboratory, Royal Melbourne Hospital at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC 3000, Australia.
Leigh HartyDepartment of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC 3000, Australia.ORCID 0000-0003-0703-226X
Kathryn C DavidsonThe Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.
Liana MackiewiczThe Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.ORCID 0000-0002-4340-4975
Merle DaytonThe Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.
Stephen WilcoxThe Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.
Lachlan WhiteheadThe Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.ORCID 0000-0002-4388-9642
Kelly L RogersThe Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.
Smitha Rose GeorgyAnatomic Pathology, Melbourne Veterinary School, Faculty of Science, University of Melbourne, Melbourne, VIC 3030, Australia.
Anna K CoussensThe Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.ORCID 0000-0002-7086-2621
Samantha L GrimleyDepartment of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC 3000, Australia.
Vincent CorbinDepartment of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC 3000, Australia.ORCID 0000-0003-1155-0959
Miranda PittDepartment of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC 3000, Australia.ORCID 0000-0002-8255-4036
Lachlan CoinDepartment of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC 3000, Australia.ORCID 0000-0002-4300-455X
Raelene PickeringDepartment of Diabetes, Monash University, Central Clinical School, Level 5, Alfred Centre, Melbourne, VIC 3004, Australia.ORCID 0000-0002-2128-1281
Merlin ThomasDepartment of Diabetes, Monash University, Central Clinical School, Level 5, Alfred Centre, Melbourne, VIC 3004, Australia.ORCID 0000-0003-0694-8743
Cody C AllisonThe Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.
Julie McAuleyDepartment of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC 3000, Australia.ORCID 0000-0003-2493-3465
Damian F J PurcellDepartment of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC 3000, Australia.ORCID 0000-0002-4485-1726
Marcel DoerflingerThe Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.ORCID 0000-0001-9159-3021
Marc PellegriniThe Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC 3052, Australia.ORCID 0000-0003-3627-3126

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The diversity of COVID-19 disease in otherwise healthy people, from seemingly asymptomatic infection to severe life-threatening disease, is not clearly understood. We passaged a naturally occurring near-ancestral SARS-CoV-2 variant, capable of infecting wild-type mice, and identified viral genomic mutations coinciding with the acquisition of severe disease in young adult mice and lethality in aged animals. Transcriptomic analysis of lung tissues from mice with severe disease elucidated a host antiviral response dominated mainly by interferon and IL-6 pathway activation in young mice, while in aged animals, a fatal outcome was dominated by TNF and TGF-β signaling. Congruent with our pathway analysis, we showed that young TNF-deficient mice had mild disease compared to controls and aged TNF-deficient animals were more likely to survive infection. Emerging clinical correlates of disease are consistent with our preclinical studies, and our model may provide value in defining aberrant host responses that are causative of severe COVID-19.

Indexed as

COVID-19SARS-CoV-2AgedAnimalsDisease Models, AnimalHumansMiceMutationVirulenceYoung AdultCOVID-19cytokinesinflammationmouse adaptedSARS-CoV-2

Identifiers

PMID37523564
PMCPMC10410703

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.