Evidence map›Paper›PMID 37523264›Full record

ArticleCell reports2023

Virulence and genomic diversity among clinical isolates of ST1 (BI/NAP1/027) Clostridioides difficile.

Qiwen Dong, Huaiying Lin, Marie-Maude Allen, Julian R Garneau, Jonathan K Sia, Rita C Smith, Fidel Haro, Tracy McMillen, Rosemary L Pope, Carolyn Metcalfe and 10 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Clostridioides difficile pathogenesis and control.Nature reviews. Microbiology · 2026
    Review
  6. Article
  7. Review
  8. Article
  9. Unique growth and morphology properties of Clade 5bioRxiv : the preprint server for biology · 2025
    Article
  10. Article
  11. AApplied and environmental microbiology · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Protection againstbioRxiv : the preprint server for biology · 2024
    Article
  18. Article
  19. Global insights into the genome dynamics ofFrontiers in cellular and infection microbiology · 2024
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 2 countries.

Qiwen DongDepartment of Medicine, University of Chicago, Chicago, IL 60637, USA; Duchossois Family Institute, University of Chicago, Chicago, IL 60637, USA. Electronic address: qiwendong0721@gmail.com.
Huaiying LinDuchossois Family Institute, University of Chicago, Chicago, IL 60637, USA.
Marie-Maude AllenDepartment of Microbiology and Infectious Diseases, Université de Sherbrooke, Sherbrooke, QC J1E 4K8, Canada.
Julian R GarneauDepartment of Microbiology and Infectious Diseases, Université de Sherbrooke, Sherbrooke, QC J1E 4K8, Canada.
Jonathan K SiaImmunology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Rita C SmithDuchossois Family Institute, University of Chicago, Chicago, IL 60637, USA.
Fidel HaroDuchossois Family Institute, University of Chicago, Chicago, IL 60637, USA.
Tracy McMillenInfection Control, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Rosemary L PopeDuchossois Family Institute, University of Chicago, Chicago, IL 60637, USA; Committee on Immunology, University of Chicago, Chicago, IL 60637, USA.
Carolyn MetcalfeDuchossois Family Institute, University of Chicago, Chicago, IL 60637, USA.
Victoria BurgoDuchossois Family Institute, University of Chicago, Chicago, IL 60637, USA.
Che WoodsonDuchossois Family Institute, University of Chicago, Chicago, IL 60637, USA.
Nicholas DyllaDuchossois Family Institute, University of Chicago, Chicago, IL 60637, USA.
Claire KohoutDuchossois Family Institute, University of Chicago, Chicago, IL 60637, USA.
Anitha SundararajanDuchossois Family Institute, University of Chicago, Chicago, IL 60637, USA.
Evan S SnitkinDivision of Infectious Diseases, Department of Internal Medicine, University of Michigan, Ann Arbor, MI 48109, USA.
Vincent B YoungDivision of Infectious Diseases, Department of Internal Medicine, University of Michigan, Ann Arbor, MI 48109, USA; Department of Microbiology & Immunology, University of Michigan, Ann Arbor, MI 48109, USA.
Louis-Charles FortierDepartment of Microbiology and Infectious Diseases, Université de Sherbrooke, Sherbrooke, QC J1E 4K8, Canada.
Mini KambojInfection Control, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Eric G PamerDepartment of Medicine, University of Chicago, Chicago, IL 60637, USA; Duchossois Family Institute, University of Chicago, Chicago, IL 60637, USA; Committee on Immunology, University of Chicago, Chicago, IL 60637, USA.
University of Chicago · USMemorial Sloan Kettering Cancer Center · USUniversité de Sherbrooke · CAUniversity of Michigan · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
INTERDISCIPLINARY TRAINING PROGRAM IN IMMUNOLOGYT32AI007090 · NIAID · UNIVERSITY OF CHICAGO · PI Peter Aidan Savage · 1985 to 2026
$11.7M
Innate Immune Defense against Clostridium Difficile InfectionR01AI095706 · NIAID · UNIVERSITY OF CHICAGO · PI PAMER, ERIC G. · 2012 to 2020
$3.4M
NCI NIH HHS P30 CA008748NIAID NIH HHS R01 AI095706NIAID NIH HHS T32 AI007090
6 · The paper itself

Abstract

Clostridioides difficile produces toxins that damage the colonic epithelium, causing colitis. Variation in disease severity is poorly understood and has been attributed to host factors and virulence differences between C. difficile strains. We test 23 epidemic ST1 C. difficile clinical isolates for their virulence in mice. All isolates encode a complete Tcd pathogenicity locus and achieve similar colonization densities. However, disease severity varies from lethal to avirulent infections. Genomic analysis of avirulent isolates reveals a 69-bp deletion in the cdtR gene, which encodes a response regulator for binary toxin expression. Deleting the 69-bp sequence in virulent R20291 strain renders it avirulent in mice with reduced toxin gene transcription. Our study demonstrates that a natural deletion within cdtR attenuates virulence in the epidemic ST1 C. difficile isolates without reducing colonization and persistence. Distinguishing strains on the basis of cdtR may enhance the specificity of diagnostic tests for C. difficile colitis.

Indexed as

Clostridioides difficileColitisAnimalsBacterial ProteinsClostridioidesGenomicsMiceNaphthalenesOligopeptidesVirulenceBacterial ProteinsNaphthalenesnucleic acid probe 1Oligopeptidesbinary toxinC. difficileCDTclinical isolatesCP: MicrobiologyprophageRT027ST1toxinsvirulence

Identifiers

PMID37523264
PMCPMC10627504
OpenAlexW4385394915

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.