Evidence map›Paper›PMID 37522762›Full record

ArticleHuman molecular genetics2023

Human herpesvirus 8 ORF57 protein is able to reduce TDP-43 pathology: network analysis identifies interacting pathways.

Chelsea J Webber, Caroline N Murphy, Alejandro N Rondón-Ortiz, Sophie J F van der Spek, Elena X Kelly, Noah M Lampl, Giulio Chiesa, Ahmad S Khalil, Andrew Emili, Benjamin Wolozin

Open access · greenAbstract read
In one paragraph

Article in Human molecular genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Proximity labeling reveals dynamic changes in the SQSTM1 protein network.bioRxiv : the preprint server for biology · 2024
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 2 countries.

Chelsea J WebberDepartments of Pharmacology, Physiology and Biophysics, Boston University, Boston, MA 02215, USA.
Caroline N MurphyDepartments of Pharmacology, Physiology and Biophysics, Boston University, Boston, MA 02215, USA.
Alejandro N Rondón-OrtizDepartments of Pharmacology, Physiology and Biophysics, Boston University, Boston, MA 02215, USA.
Sophie J F van der SpekDepartments of Pharmacology, Physiology and Biophysics, Boston University, Boston, MA 02215, USA.
Elena X KellyDepartments of Pharmacology, Physiology and Biophysics, Boston University, Boston, MA 02215, USA.
Noah M LamplCenter for Network Systems Biology, Boston University, Boston, MA 02215, USA.
Giulio ChiesaBiological Design Center, Boston University, Boston, MA 02215, USA.
Ahmad S KhalilBiological Design Center, Boston University, Boston, MA 02215, USA.
Andrew EmiliCenter for Network Systems Biology, Boston University, Boston, MA 02215, USA.
Benjamin WolozinDepartments of Pharmacology, Physiology and Biophysics, Boston University, Boston, MA 02215, USA.ORCID 0000-0003-2068-1475
Boston University · US

Funding

Synthetic toolkit for precision gene expression control and signal processing in mammalian cellsR01EB029483 · NIBIB · HARVARD UNIVERSITY · PI Ahmad Samir Khalil · 2020 to 2026
$5.0M
The role of N6-methyladenosine modified RNA in Alzheimer's disease: Equipment SupplementR01AG080810 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI Benjamin L Wolozin, Xiaoling Zhang · 2023 to 2026
$3.2M
NIBIB NIH HHS R01 EB029483NIH HHS AG080810
6 · The paper itself

Abstract

Aggregation of TAR DNA-binding protein 43 kDa (TDP-43) is thought to drive the pathophysiology of amyotrophic lateral sclerosis and some frontotemporal dementias. TDP-43 is normally a nuclear protein that in neurons translocates to the cytoplasm and can form insoluble aggregates upon activation of the integrated stress response (ISR). Viruses evolved to control the ISR. In the case of Herpesvirus 8, the protein ORF57 acts to bind protein kinase R, inhibit phosphorylation of eIF2α and reduce activation of the ISR. We hypothesized that ORF57 might also possess the ability to inhibit aggregation of TDP-43. ORF57 was expressed in the neuronal SH-SY5Y line and its effects on TDP-43 aggregation characterized. We report that ORF57 inhibits TDP-43 aggregation by 55% and elicits a 2.45-fold increase in the rate of dispersion of existing TDP-43 granules. These changes were associated with a 50% decrease in cell death. Proteomic studies were carried out to identify the protein interaction network of ORF57. We observed that ORF57 directly binds to TDP-43 as well as interacts with many components of the ISR, including elements of the proteostasis machinery known to reduce TDP-43 aggregation. We propose that viral proteins designed to inhibit a chronic ISR can be engineered to remove aggregated proteins and dampen a chronic ISR.

Indexed as

Amyotrophic Lateral SclerosisHerpesvirus 8, HumanNeuroblastomaCell LineDNA-Binding ProteinsHumansProteomicsViral Regulatory and Accessory ProteinsDNA-Binding ProteinsORF57 protein, human herpesvirus 8Viral Regulatory and Accessory Proteins

Identifiers

PMID37522762
PMCPMC10549787
OpenAlexW4385406368

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.