Evidence map›Paper›PMID 37521624›Full record

ArticleACS omega2023

Mutational Study of the Tryptophan Tetrad Important for Electron Transfer in European Robin Cryptochrome 4a.

Anders Frederiksen, Corinna Langebrake, Maja Hanić, Georg Manthey, Henrik Mouritsen, Miriam Liedvogel, Ilia A Solov'yov

Abstract read
In one paragraph

Article in ACS omega, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Magnetic orientation in juvenile Atlantic herring (Journal of the Royal Society, Interface · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Anders FrederiksenInstitute of Physics, Carl von Ossietzky Universität Oldenburg, Carl-von-Ossietzky Strasse 9-11, Oldenburg 26129, Germany.
Corinna LangebrakeInstitute of Avian Research, An der Vogelwarte 21, Wilhelmshaven 26386, Germany.
Maja HanićInstitute of Physics, Carl von Ossietzky Universität Oldenburg, Carl-von-Ossietzky Strasse 9-11, Oldenburg 26129, Germany.
Georg MantheyInstitute of Physics, Carl von Ossietzky Universität Oldenburg, Carl-von-Ossietzky Strasse 9-11, Oldenburg 26129, Germany.
Henrik MouritsenDepartment of Biology and Environmental Sciences, Carl von Ossietzky University of Oldenburg, Carl-von-Ossietzky Strasse 9-11, Oldenburg 26129, Germany.
Miriam LiedvogelInstitute of Avian Research, An der Vogelwarte 21, Wilhelmshaven 26386, Germany.
Ilia A Solov'yovInstitute of Physics, Carl von Ossietzky Universität Oldenburg, Carl-von-Ossietzky Strasse 9-11, Oldenburg 26129, Germany.ORCID https://orcid.org/0000-0002-8626-145X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability of migratory birds to sense magnetic fields has been known for decades, although the understanding of the underlying mechanism is still elusive. Currently, the strongest magnetoreceptor candidate in birds is a protein called cryptochrome 4a. The cryptochrome 4a protein has changed through evolution, apparently endowing some birds with a more pronounced magnetic sensitivity than others. Using phylogenetic tools, we show that a specific tryptophan tetrad and a tyrosine residue predicted to be essential for cryptochrome activation are highly conserved in the avian clade. Through state-of-the-art molecular dynamics simulations and associated analyses, we also studied the role of these specific residues and the associated mutants on the overall dynamics of the protein. The analyses of the single residue mutations were used to judge how far a local change in the protein structure can impact specific dynamics of European robin cryptochrome 4a. We conclude that the replacements of each of the tryptophans one by one with a phenylalanine do not compromise the overall stability of the protein.

Identifiers

PMID37521624
PMCPMC10373462

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.