Evidence map›Paper›PMID 37519246›Full record

ArticleThe EMBO journal2023

A non-proteolytic release mechanism for HMCES-DNA-protein crosslinks.

Maximilian Donsbach, Sophie Dürauer, Florian Grünert, Kha T Nguyen, Richa Nigam, Denitsa Yaneva, Pedro Weickert, Rachel Bezalel-Buch, Daniel R Semlow, Julian Stingele

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Maximilian Donsbach *Department of Biochemistry, Ludwig-Maximilians-University Munich, Munich, Germany.
Sophie Dürauer *Department of Biochemistry, Ludwig-Maximilians-University Munich, Munich, Germany.
Florian GrünertDepartment of Biochemistry, Ludwig-Maximilians-University Munich, Munich, Germany.
Kha T NguyenDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0001-9191-8754
Richa NigamDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA.
Denitsa YanevaDepartment of Biochemistry, Ludwig-Maximilians-University Munich, Munich, Germany.
Pedro WeickertDepartment of Biochemistry, Ludwig-Maximilians-University Munich, Munich, Germany.
Rachel Bezalel-BuchDepartment of Biological Chemistry and Molecular Biophysics, Washington University School of Medical, Saint Louis, MO, USA.ORCID 0000-0002-8798-3649
Daniel R SemlowDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0001-6538-9713
Julian StingeleDepartment of Biochemistry, Ludwig-Maximilians-University Munich, Munich, Germany.ORCID 0000-0001-6020-2075
Ludwig-Maximilians-Universität München · DECalifornia Institute of Technology · USWashington University in St. Louis · US

Funding

MECHANISMS OF DNA REPLICATION AND MAINTENANCE IN EUKARYOTESR35GM118129 · NIGMS · WASHINGTON UNIVERSITY · PI BURGERS, PETER M · 2016 to 2025
$6.7M
Supplement: Emerging Mechanisms of Replication-coupled DNA RepairR01GM151410 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI Daniel Semlow · 2023 to 2026
$1.4M
NIGMS NIH HHS R01 GM151410NIGMS NIH HHS R35 GM118129
6 · The paper itself

Abstract

The conserved protein HMCES crosslinks to abasic (AP) sites in ssDNA to prevent strand scission and the formation of toxic dsDNA breaks during replication. Here, we report a non-proteolytic release mechanism for HMCES-DNA-protein crosslinks (DPCs), which is regulated by DNA context. In ssDNA and at ssDNA-dsDNA junctions, HMCES-DPCs are stable, which efficiently protects AP sites against spontaneous incisions or cleavage by APE1 endonuclease. In contrast, HMCES-DPCs are released in dsDNA, allowing APE1 to initiate downstream repair. Mechanistically, we show that release is governed by two components. First, a conserved glutamate residue, within HMCES' active site, catalyses reversal of the crosslink. Second, affinity to the underlying DNA structure determines whether HMCES re-crosslinks or dissociates. Our study reveals that the protective role of HMCES-DPCs involves their controlled release upon bypass by replication forks, which restricts DPC formation to a necessary minimum.

Indexed as

DNAProteinsDNA DamageDNA RepairDNA, Single-StrandedDNADNA, Single-StrandedProteinsabasic (AP) sitesDNA-protein crosslinksDNA repairDNA replicationHMCES

Identifiers

PMID37519246
PMCPMC10505908
OpenAlexW4385407028

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.