Evidence map›Paper›PMID 37516764›Full record

ArticleNature communications2023

Rapid gene content turnover on the germline-restricted chromosome in songbirds.

Stephen A Schlebusch, Jakub Rídl, Manon Poignet, Francisco J Ruiz-Ruano, Jiří Reif, Petr Pajer, Jan Pačes, Tomáš Albrecht, Alexander Suh, Radka Reifová

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

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  5. B chromosomes put the 'super' in supernumerary.Trends in genetics : TIG · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 4 countries.

Stephen A SchlebuschDepartment of Zoology, Faculty of Science, Charles University, Prague, Czech Republic. stephen.schlebusch@gmail.com.ORCID 0000-0003-2355-2652
Jakub RídlDepartment of Zoology, Faculty of Science, Charles University, Prague, Czech Republic.ORCID 0000-0003-2148-3606
Manon PoignetDepartment of Zoology, Faculty of Science, Charles University, Prague, Czech Republic.ORCID 0000-0003-2445-830X
Francisco J Ruiz-RuanoSchool of Biological Sciences, University of East Anglia, Norwich, UK.ORCID 0000-0002-5391-301X
Jiří ReifInstitute for Environmental Studies, Faculty of Science, Charles University, Prague, Czech Republic.
Petr PajerMilitary Health Institute, Military Medical Agency, Tychonova 1, 160 01, Prague 6, San Antonio, Czech Republic.
Jan PačesInstitute of Molecular Genetics, Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0003-3059-6127
Tomáš AlbrechtDepartment of Zoology, Faculty of Science, Charles University, Prague, Czech Republic.ORCID 0000-0002-9213-0034
Alexander SuhSchool of Biological Sciences, University of East Anglia, Norwich, UK.ORCID 0000-0002-8979-9992
Radka ReifováDepartment of Zoology, Faculty of Science, Charles University, Prague, Czech Republic. radka.reifova@natur.cuni.cz.ORCID 0000-0001-5852-5174
Charles University · CZCzech Academy of Sciences · CZUniversity of East Anglia · GB

Funding

European Research Council 101002158
6 · The paper itself

Abstract

The germline-restricted chromosome (GRC) of songbirds represents a taxonomically widespread example of programmed DNA elimination. Despite its apparent indispensability, we still know very little about the GRC's genetic composition, function, and evolutionary significance. Here we assemble the GRC in two closely related species, the common and thrush nightingale. In total we identify 192 genes across the two GRCs, with many of them present in multiple copies. Interestingly, the GRC appears to be under little selective pressure, with the genetic content differing dramatically between the two species and many GRC genes appearing to be pseudogenized fragments. Only one gene, cpeb1, has a complete coding region in all examined individuals of the two species and shows no copy number variation. The acquisition of this gene by the GRC corresponds with the earliest estimates of the GRC origin, making it a good candidate for the functional indispensability of the GRC in songbirds.

Indexed as

SongbirdsAnimalsBiological EvolutionChromosomesGerm CellsOpen Reading Frames

Identifiers

PMID37516764
PMCPMC10387091
OpenAlexW4385374552

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.