Evidence map›Paper›PMID 37511233›Full record

ArticleInternational journal of molecular sciences2023

Inner Amino Acid Contacts Are Key Factors of Multistage Structural Rearrangements of DNA and Affect Substrate Specificity of Apurinic/Apyrimidinic Endonuclease APE1.

Anatoly A Bulygin, Victoria N Syryamina, Aleksandra A Kuznetsova, Darya S Novopashina, Sergei A Dzuba, Nikita A Kuznetsov

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Anatoly A BulyginInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch of Russian Academy of Sciences (SB RAS), Novosibirsk 630090, Russia.ORCID 0000-0002-6689-4647
Victoria N SyryaminaInstitute of Chemical Kinetics and Combustion, Siberian Branch of Russian Academy of Sciences (SB RAS), Novosibirsk 630090, Russia.
Aleksandra A KuznetsovaInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch of Russian Academy of Sciences (SB RAS), Novosibirsk 630090, Russia.ORCID 0000-0002-9805-7050
Darya S NovopashinaInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch of Russian Academy of Sciences (SB RAS), Novosibirsk 630090, Russia.ORCID 0000-0001-6082-6785
Sergei A DzubaInstitute of Chemical Kinetics and Combustion, Siberian Branch of Russian Academy of Sciences (SB RAS), Novosibirsk 630090, Russia.ORCID 0000-0001-8880-6559
Nikita A KuznetsovInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch of Russian Academy of Sciences (SB RAS), Novosibirsk 630090, Russia.ORCID 0000-0002-4016-198X
Institute of Chemical Biology and Fundamental Medicine · RUSiberian Branch of the Russian Academy of Sciences · RUNovosibirsk State University · RU

Funding

Russian Ministry of Science and Higher Education 121031300041-4Russian Ministry of Science and Higher Education FWGF-FWGF-2021-0003Russian Science Foundation 23-44-00064
6 · The paper itself

Abstract

Apurinic/apyrimidinic endonuclease 1 (APE1) is one of the most important enzymes in base excision repair. Studies on this enzyme have been conducted for a long time, but some aspects of its activity remain poorly understood. One such question concerns the mechanism of damaged-nucleotide recognition by the enzyme, and the answer could shed light on substrate specificity control in all enzymes of this class. In the present study, by pulsed electron-electron double resonance (DEER, also known as PELDOR) spectroscopy and pre-steady-state kinetic analysis along with wild-type (WT) APE1 from

Indexed as

Amino AcidsDNA-(Apurinic or Apyrimidinic Site) LyaseDeoxyuridineDNADNA DamageDNA RepairElectron Spin Resonance SpectroscopyEndonucleasesKineticsNucleotidesSubstrate SpecificityAmino AcidsDeoxyuridineDNADNA-(Apurinic or Apyrimidinic Site) LyaseEndonucleasesNucleotidesactive-site plasticityapurinic/apyrimidinic endonucleasebase excision repairconformational dynamicsdamaged nucleotidenucleotide eversionnucleotide incision repair

Identifiers

PMID37511233
PMCPMC10380840
OpenAlexW4384525990

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.