Evidence map›Paper›PMID 37509492›Full record

ArticleBiomedicines2023

Bioinformatic Analysis and Machine Learning Methods in Neonatal Sepsis: Identification of Biomarkers and Immune Infiltration.

Zhou Jiang, Yujia Luo, Li Wei, Rui Gu, Xuandong Zhang, Yuanyuan Zhou, Songying Zhang

Abstract read
In one paragraph

Article in Biomedicines, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zhou JiangDepartment of NICU, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, No. 368 Xiasha Road, Qiantang District, Hangzhou 310016, China.
Yujia LuoDepartment of NICU, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, No. 368 Xiasha Road, Qiantang District, Hangzhou 310016, China.
Li WeiDepartment of NICU, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, No. 368 Xiasha Road, Qiantang District, Hangzhou 310016, China.
Rui GuDepartment of NICU, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, No. 368 Xiasha Road, Qiantang District, Hangzhou 310016, China.
Xuandong ZhangDepartment of NICU, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, No. 368 Xiasha Road, Qiantang District, Hangzhou 310016, China.
Yuanyuan ZhouDepartment of Reproductive Endocrinology, Women's Hospital, School of Medicine, Zhejiang University, Hangzhou 310006, China.
Songying ZhangDepartment of Obstetrics and Gynecology, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, No. 3 Qingchun East Road, Shangcheng District, Hangzhou 310016, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The disease neonatal sepsis (NS) poses a serious threat to life, and its pathogenesis remains unclear. Using the Gene Expression Omnibus (GEO) database, differentially expressed genes (DEGs) were identified and functional enrichment analyses were conducted. Three machine learning algorithms containing the least absolute shrinkage and selection operator (LASSO), support vector machine recursive feature elimination (SVM-RFE), and random forest (RF) were applied to identify the optimal feature genes (OFGs). This study conducted CIBERSORT to present the abundance of immune infiltrates between septic and control neonates and assessed the relationship between OFGs and immune cells. In total, 44 DEGs were discovered between the septic and control newborns. Throughout the enrichment analysis, DEGs were primarily related to inflammatory signaling pathways and immune responses. The OFGs derived from machine learning algorithms were intersected to yield four biomarkers, namely Hexokinase 3 (

Indexed as

biomarkersGEO databaseimmune infiltrationmachine learningneonatal sepsis

Identifiers

PMID37509492
PMCPMC10377054

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.