Evidence map›Paper›PMID 37509403›Full record

ArticleCancers2023

Applied Molecular-Based Quality Control of Biobanked Samples for Multi-Omics Approach.

Anna Michalska-Falkowska, Jacek Niklinski, Hartmut Juhl, Anetta Sulewska, Joanna Kisluk, Radoslaw Charkiewicz, Michal Ciborowski, Rodryg Ramlau, Robert Gryczka, Cezary Piwkowski and 9 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. miRNA-Seq Tissue Diagnostic Signature: A Novel Model for NSCLC Subtyping.International journal of molecular sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 3 countries.

Anna Michalska-FalkowskaBiobank, Medical University of Bialystok, 15-269 Bialystok, Poland.ORCID 0000-0002-4859-4157
Jacek NiklinskiDepartment of Clinical Molecular Biology, Medical University of Bialystok, 15-269 Bialystok, Poland.
Hartmut JuhlIndivumed Services, 20251 Hamburg, Germany.
Anetta SulewskaDepartment of Clinical Molecular Biology, Medical University of Bialystok, 15-269 Bialystok, Poland.ORCID 0000-0001-7070-8491
Joanna KislukDepartment of Clinical Molecular Biology, Medical University of Bialystok, 15-269 Bialystok, Poland.
Radoslaw CharkiewiczDepartment of Clinical Molecular Biology, Medical University of Bialystok, 15-269 Bialystok, Poland.
Michal CiborowskiClinical Research Centre, Medical University of Bialystok, 15-276 Bialystok, Poland.ORCID 0000-0003-3729-0518
Rodryg RamlauDepartment of Oncology, Poznan University of Medical Sciences, 60-569 Poznan, Poland.
Robert GryczkaDepartment of Oncology, Poznan University of Medical Sciences, 60-569 Poznan, Poland.
Cezary PiwkowskiDepartment of Thoracic Surgery, Poznan University of Medical Sciences, 60-569 Poznan, Poland.
Miroslaw KozlowskiDepartment of Thoracic Surgery, Medical University of Bialystok, 15-269 Bialystok, Poland.
Borys MiskiewiczDepartment of Thoracic Surgery, Medical University of Bialystok, 15-269 Bialystok, Poland.
Przemyslaw BiecekFaculty of Mathematics and Information Science, Warsaw University of Technology, 00-662 Warsaw, Poland.
Karolina WnorowskaDepartment of Medical Pathomorphology, Medical University of Bialystok, 15-269 Bialystok, Poland.
Zofia Dzieciol-AnikiejBiobank, Medical University of Bialystok, 15-269 Bialystok, Poland.
Karine SargsyanInternational Biobanking and Education, Medical University of Graz, 8036 Graz, Austria.ORCID 0000-0001-5853-4994
Wojciech Naumnik1st Department of Lung Diseases and Tuberculosis, Medical University of Bialystok, 15-540 Bialystok, Poland.
Robert Mroz2nd Department of Lung Diseases and Tuberculosis, Medical University of Bialystok, 15-540 Bialystok, Poland.
Joanna Reszec-GielazynBiobank, Medical University of Bialystok, 15-269 Bialystok, Poland.
Medical University of Białystok · PLPoznan University of Medical Sciences · PLCedars-Sinai Medical Center · USWarsaw University of Technology · PL

Funding

National Centre for Research and Development STRATEGMED2/266484/2/NCBR/2015
6 · The paper itself

Abstract

Biobanks are vital for high-throughput translational research, but the rapid development of novel molecular techniques, especially in omics assays, poses challenges to traditional practices and recommendations. In our study, we used biospecimens from oncological patients in Polish clinics and collaborated with the Indivumed Group. For serum/plasma samples, we monitored hemolysis, controlled RNA extraction, assessed cDNA library quality and quantity, and verified NGS raw data. Tissue samples underwent pathologic evaluation to confirm histology and determine tumor content. Molecular quality control measures included evaluating the RNA integrity number, assessing cDNA library quality and quantity, and analyzing NGS raw data. Our study yielded the creation of distinct workflows for conducting preanalytical quality control of serum/plasma and fresh-frozen tissue samples. These workflows offer customization options to suit the capabilities of different biobanking entities. In order to ensure the appropriateness of biospecimens for advanced research applications, we introduced molecular-based quality control methods that align with the demands of high-throughput assays. The novelty of proposed workflows, rooted in innovative molecular techniques, lies in the integration of these QC methods into a comprehensive schema specifically designed for high-throughput research applications.

Indexed as

best practicesmulti-omics researchomics-grade biospecimensquality managementtranslational research

Identifiers

PMID37509403
PMCPMC10378006
OpenAlexW4385225492

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.