Evidence map›Paper›PMID 37507420›Full record

ArticleScientific data2023

Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria.

Ajit Kumar Patra, Phuong-Thao Ho, Siyeong Jun, Seung Jae Lee, Yuseob Kim, Yong-Jin Won

Abstract readDataset
In one paragraph

Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The First Genome Survey of the SnailAnimals : an open access journal from MDPI · 2023
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ajit Kumar PatraDepartment of Life Science, Division of EcoScience, Ewha Womans University, Seoul, South Korea.
Phuong-Thao HoDepartment of Life Science, Division of EcoScience, Ewha Womans University, Seoul, South Korea.
Siyeong JunDepartment of Life Science, Division of EcoScience, Ewha Womans University, Seoul, South Korea.
Seung Jae LeeBioinformatics Team, DNA Link, Seoul, South Korea.
Yuseob KimDepartment of Life Science, Division of EcoScience, Ewha Womans University, Seoul, South Korea. yuseob@ewha.ac.kr.
Yong-Jin WonDepartment of Life Science, Division of EcoScience, Ewha Womans University, Seoul, South Korea. won@ewha.ac.kr.

Funding

Ewha Womans University (Ewha) Research Grant of 2023Korea Institute of Ocean Science and Technology (KIOST) PE9988BKorea Institute of Ocean Science and Technology (KIOST) PEA0083Ministry of Education (Ministry of Education of the Republic of Korea) 2019R1I1A2A02057134National Research Foundation of Korea (NRF) NFR-2015R1A4A1041997
6 · The paper itself

Abstract

Batillaridae is a common gastropod family that occurs abundantly in the shallow coastal zone of the intertidal mudflats of the northwest Pacific Ocean, Australasia, and North America. In this family, Batillaria attramentaria is known for its biological invasion and colonization in estuarine and intertidal zones. It can endure and adapt the harsh intertidal conditions such as frequent temperature alteration, salinity, and air exposure. Therefore, we sequenced and assembled this Korean batillariid genome to get insight into its intertidal adaptive features. Approximately 53 Gb of DNA sequences were generated, and 863 scaffolds were assembled into a draft genome of 0.715 Gb with 97.1% BUSCO completeness value. A total of 40,596 genes were predicted. We estimated that B. attramentaria and Conus consors diverged about 230 million years ago (MYA) based on the phylogenetic analysis of closely related gastropod species. This genome study sets the footstep for genomics studies among native and introduced Batillaria populations and the Batillaridae family members.

Indexed as

GastropodaAnimalsGenomeGenomicsPhylogenyRepublic of Korea

Identifiers

PMID37507420
PMCPMC10382545

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.