Evidence map›Paper›PMID 37505984›Full record

ArticleCell reports2023

Condensate cooperativity underlies transgenerational gene silencing.

Zhenzhen Du, Kun Shi, Jordan S Brown, Tao He, Wei-Sheng Wu, Ying Zhang, Heng-Chi Lee, Donglei Zhang

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

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  9. Intraspecific variation in the duration of epigenetic inheritance.bioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Zhenzhen DuDepartment of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei 430032, China.
Kun ShiDepartment of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei 430032, China.
Jordan S BrownDepartment of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL 60637, USA.
Tao HeDepartment of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei 430032, China.
Wei-Sheng WuDepartment of Electrical Engineering, National Cheng Kung University, Tainan 701, Taiwan.
Ying ZhangDepartment of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei 430032, China. Electronic address: zzhangying@hust.edu.cn.
Heng-Chi LeeDepartment of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL 60637, USA. Electronic address: hengchilee@uchicago.edu.
Donglei ZhangDepartment of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei 430032, China; Cell Architecture Research Institute, Huazhong University of Science and Technology, Wuhan, Hubei 430030, China. Electronic address: zhang_donglei@hust.edu.cn.
Huazhong University of Science and Technology · CNUniversity of Chicago · USNational Cheng Kung University · TW

Funding

PREDOCTORAL TRAINING IN GENETICS AND REGULATIONT32GM007197 · NIGMS · UNIVERSITY OF CHICAGO · PI ROTHMAN-DENES, LUCIA B. B · 1985 to 2020
$17.0M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
piRNA-mediated genome surveillance of germline transcriptsR01GM132457 · NIGMS · UNIVERSITY OF CHICAGO · PI LEE, HENG-CHI · 2019 to 2023
$1.7M
NIGMS NIH HHS R01 GM132457NIGMS NIH HHS T32 GM007197NIH HHS P40 OD010440
6 · The paper itself

Abstract

Biomolecular condensates have been shown to interact in vivo, yet it is unclear whether these interactions are functionally meaningful. Here, we demonstrate that cooperativity between two distinct condensates-germ granules and P bodies-is required for transgenerational gene silencing in C. elegans. We find that P bodies form a coating around perinuclear germ granules and that P body components CGH-1/DDX6 and CAR-1/LSM14 are required for germ granules to organize into sub-compartments and concentrate small RNA silencing factors. Functionally, while the P body mutant cgh-1 is competent to initially trigger gene silencing, it is unable to propagate the silencing to subsequent generations. Mechanistically, we trace this loss of transgenerational silencing to defects in amplifying secondary small RNAs and the stability of WAGO-4 Argonaute, both known carriers of gene silencing memories. Together, these data reveal that cooperation between condensates results in an emergent capability of germ cells to establish heritable memory.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsGene SilencingGerm CellsRNA InterferenceRNA NucleotidyltransferasesRNA, Small InterferingCaenorhabditis elegans Proteinscgh-1 protein, C elegansRNA NucleotidyltransferasesRNA, Small InterferingArgonauteCGH-1condensateCP: GenomicsCP: Molecular biologygerm cellsgerm granuleP bodyphase separationPIWIsmall RNAtransgenerational inheritance

Identifiers

PMID37505984
PMCPMC10540246
OpenAlexW4385357498

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.