Evidence map›Paper›PMID 37503290›Full record

ArticlebioRxiv : the preprint server for biology2023

Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice.

Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges M G M Verjans, Daniel P Depledge

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Werner J D OuwendijkHerpesLabNL, Department of Viroscience, Erasmus Medical Center, Rotterdam, Netherlands.
Pavitra RoychoudhuryDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, 98195, USA.
Anthony L CunninghamCentre for Virus Research, The Westmead Institute for Medical Research, Sydney, NSW, Australia.
Keith R JeromeDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, 98195, USA.
David M KoelleDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, 98195, USA.
Paul R KinchingtonDepartment of Ophthalmology and of Molecular Microbiology and Genetics, University of Pittsburgh, Pittsburgh, PA, United States.
Ian MohrDepartment of Microbiology, New York University School of Medicine, New York, NY 10016, USA.
Angus C WilsonDepartment of Microbiology, New York University School of Medicine, New York, NY 10016, USA.
Georges M G M VerjansHerpesLabNL, Department of Viroscience, Erasmus Medical Center, Rotterdam, Netherlands.
Daniel P DepledgeDepartment of Microbiology, New York University School of Medicine, New York, NY 10016, USA.
University of Washington · USErasmus University Rotterdam · NLNew York University · USMedizinische Hochschule Hannover · DEThe University of Sydney · AUUniversity of Pittsburgh · US

Funding

Virus Production and Manipulation of Protein/Gene Expression ModuleP30EY008098 · NEI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Paul R. Kinchington · 1989 to 2026
$17.8M
Control of Translation in Herpesvirus Infected Cells - Resubmission - 1R01GM056927 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Ian J Mohr · 1999 to 2026
$7.6M
Large Scale T Cell Epitope Discovery: Local and Systemic T cell Response to Herpes Simplex Virus75N93019C00063 · NIAID · UNIVERSITY OF WASHINGTON · PI MYER, TIM · 2019 to 2023
$5.5M
Virus Host Interactions that Regulate Translation in Cells Infected with HSV-1R01AI073898 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MOHR, IAN J · 2008 to 2020
$5.0M
Role of VZV Latency Transcript (VLT) and ORF63 in latency and reactivationR01AI151290 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KINCHINGTON, PAUL R., VERJANS, GEORGES MICHEL · 2021 to 2025
$3.5M
EPITRANSCRIPTOMIC REGULATION OF CYTOMEGALOVIRUS INFECTIONR01AI152543 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DEPLEDGE, DANIEL PEARCE, MOHR, IAN J · 2020 to 2025
$2.7M
Endonuclease-mediated disruption of latent HSV as curative therapyR01AI132599 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI JEROME, KEITH R · 2018 to 2022
$2.6M
High-Performance Compute Cluster for Comprehensive Cancer and Infectious Diseases ResearchS10OD028685 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BRADLEY, PHILIP · 2020 to 2020
$2.0M
Viral disruption of host transcriptome integrityR01AI170583 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ANGUS C WILSON · 2023 to 2026
$1.9M
NEI NIH HHS P30 EY008098NIAID NIH HHS 75N93019C00063NIAID NIH HHS R01 AI073898NIAID NIH HHS R01 AI132599NIAID NIH HHS R01 AI151290NIAID NIH HHS R01 AI152543NIAID NIH HHS R01 AI170583NIGMS NIH HHS R01 GM056927NIH HHS S10 OD028685
6 · The paper itself

Abstract

Most individuals are latently infected with herpes simplex virus type 1 (HSV-1) and it is well-established that HSV-1 establishes latency in sensory neurons of peripheral ganglia. However, it was recently proposed that latent virus is also present in immune cells recovered from ganglia in a mouse model used for studying latency. Here, we reanalyzed the single-cell RNA sequencing (scRNA-Seq) data that formed the basis for this conclusion. Unexpectedly, off-target priming in 3' scRNA-Seq experiments enabled the detection of non-polyadenylated HSV-1

Identifiers

PMID37503290
PMCPMC10370134
OpenAlexW4384827427

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.