Evidence map›Paper›PMID 37503248›Full record

ArticlebioRxiv : the preprint server for biology2023

Visible light-induced specific protein reaction delineates early stages of cell adhesion.

Rolle Rahikainen, Susan K Vester, Paula Turkki, Chasity P Janosko, Alexander Deiters, Vesa P Hytönen, Mark Howarth

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Rolle RahikainenFaculty of Medicine and Health Technology, Tampere University, Arvo Ylpön katu 34, 33520, Tampere, Finland and Fimlab Laboratories, Biokatu 4, 33520, Tampere, Finland.
Susan K VesterDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK.
Paula TurkkiFaculty of Medicine and Health Technology, Tampere University, Arvo Ylpön katu 34, 33520, Tampere, Finland and Fimlab Laboratories, Biokatu 4, 33520, Tampere, Finland.
Chasity P JanoskoDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, United States.
Alexander DeitersDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, United States.
Vesa P HytönenFaculty of Medicine and Health Technology, Tampere University, Arvo Ylpön katu 34, 33520, Tampere, Finland and Fimlab Laboratories, Biokatu 4, 33520, Tampere, Finland.
Mark HowarthDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK.

Funding

"On the Fly" Time Resolved Cryo-EM Studies of Intermediate HIV-1 RT Transition StatesR01AI175067 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Guillermo Alberto Calero, Alexander Deiters · 2022 to 2026
$3.8M
NIAID NIH HHS R01 AI175067
6 · The paper itself

Abstract

Light is well established for control of bond breakage, but not for control of specific bond formation in complex environments. We previously engineered diffusion-limited reactivity of SpyTag003 peptide with its protein partner SpyCatcher003 through spontaneous transamidation. This system enables precise and irreversible assembly of biological building blocks, with applications from biomaterials to vaccines. Here, we establish a system for rapid control of this amide bond formation with visible light. We have generated a caged SpyCatcher003, which allows light triggering of covalent bond formation to SpyTag003 in mammalian cells. Photocaging is achieved through site-specific incorporation of an unnatural coumarin-lysine at the reactive site of SpyCatcher003. We showed uniform specific reaction in cell lysate upon light activation. We then used the spatiotemporal precision of a 405 nm confocal laser for uncaging in seconds, probing the earliest events in mechanotransduction by talin, the key force sensor between the cytoskeleton and extracellular matrix. Reconstituting talin induced rapid biphasic extension of lamellipodia, revealing the kinetics of talin-regulated cell spreading and polarization. Thereafter we determined the hierarchy of recruitment of key components for cell adhesion. Precise control over site-specific protein reaction with visible light creates diverse opportunities for cell biology and nanoassembly.

Indexed as

adhesion complexbioconjugationmechanosensingnoncanonical amino acidOptogeneticsphoto-activation

Identifiers

PMID37503248
PMCPMC10370186

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.