ArticlebioRxiv : the preprint server for biology2023
SURROGATE SELECTION OVERSAMPLES EXPANDED T CELL CLONOTYPES.
Peng Yu, Yumin Lian, Cindy L Zuleger, Richard J Albertini, Mark R Albertini, Michael A Newton
Abstract readPreprint
In one paragraphArticle in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
2 · The registryThe trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
3 · Its place in the literatureWho cites it
0 citing papers in PubMed.
No citing paper in PubMed yet.
4 · The recordCorrections and comments
5 · Who and what moneyAuthors and funding
6 authors.
Peng YuDepartment of Statistics, University of Wisconsin, Madison.
Yumin LianDepartment of Chemistry, Laboratory of Genetics, University of Wisconsin, Madison.
Cindy L ZulegerDepartment of Medicine, School of Medicine and Public Health, University of Wisconsin, Madison.
Richard J AlbertiniUniversity of Vermont, Burlington, VT, USA.
Mark R AlbertiniDepartment of Medicine, School of Medicine and Public Health, University of Wisconsin, Madison.
Michael A NewtonDepartment of Statistics, University of Wisconsin, Madison.
Funding
UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI Justine Yang Bruce · 1985 to 2026
$142.6MUniversity of Wisconsin Institute for Clinical and Translational ResearchUL1TR002373 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI ELIZABETH S BURNSIDE, Allan R. Brasier · 2017 to 2026
$75.9MVisualizing EBV and HCMV DNA Dynamics During InfectionP01CA022443 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI Paul F. Lambert · 1985 to 2026
$53.1MProject 3: Modulation of the head and neck tumor immune microenvironment by targeting the TAM family of receptorsP50CA278595 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI David J Beebe · 2022 to 2026
$12.5MRadionuclide Production and Radiochemistry Core Description CoreP01CA250972 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI KIM, KYUNGMANN · 2020 to 2024
$12.5MUniversity of Wisconsin Prostate SPOREP50CA269011 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI DAVID F. JARRARD, DOUGLAS G. MCNEEL · 2023 to 2026
$10.6MStatistical methods for spatial RNA sequencing experimentsR01GM102756 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KENDZIORSKI, CHRISTINA · 2012 to 2024
$3.8MNCATS NIH HHS UL1 TR002373NCI NIH HHS P01 CA022443NCI NIH HHS P01 CA250972NCI NIH HHS P30 CA014520NCI NIH HHS P50 CA269011NCI NIH HHS P50 CA278595NIGMS NIH HHS R01 GM102756
6 · The paper itselfAbstract
Inference from immunological data on cells in the adaptive immune system may benefit from modeling specifications that describe variation in the sizes of various clonal sub-populations. We develop one such specification in order to quantify the effects of surrogate selection assays, which we confirm may lead to an enrichment for amplified, potentially disease-relevant
Indexed as
Bayes’s ruleclonal expansiondiversity statisticenrichmentexchangeable birth-death processesexperimental designsingle cell sequencingsize biassomatic mutationYule-Simon law
Identifiers
PMID37503118
PMCPMC10369934
What OpenQuestion holds
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LicenceCC BY-NC
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