Evidence map›Paper›PMID 37500763›Full record

ArticleCommunications medicine2023

Text-based predictions of COVID-19 diagnosis from self-reported chemosensory descriptions.

Hongyang Li, Richard C Gerkin, Alyssa Bakke, Raquel Norel, Guillermo Cecchi, Christophe Laudamiel, Masha Y Niv, Kathrin Ohla, John E Hayes, Valentina Parma and 1 more

Abstract read
In one paragraph

Article in Communications medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Hongyang LiHealth Care and Life Sciences, IBM T.J. Watson Research Center, Yorktown Heights, NY, USA.
Richard C GerkinSchool of Life Sciences, Arizona State University, Tempe, AZ, USA.
Alyssa BakkeDepartment of Food Science, The Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0002-1685-2000
Raquel NorelHealth Care and Life Sciences, IBM T.J. Watson Research Center, Yorktown Heights, NY, USA.ORCID http://orcid.org/0000-0001-7737-4172
Guillermo CecchiHealth Care and Life Sciences, IBM T.J. Watson Research Center, Yorktown Heights, NY, USA.ORCID http://orcid.org/0000-0003-1013-8348
Christophe LaudamielDepartment of Scent Engineering, DreamAir LLC, New York, NY, USA.
Masha Y NivThe Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel.ORCID http://orcid.org/0000-0001-8275-8795
Kathrin OhlaDepartment of Food Science, The Pennsylvania State University, University Park, PA, USA.
John E HayesDepartment of Food Science, The Pennsylvania State University, University Park, PA, USA.
Valentina ParmaMonell Chemical Senses Center, Philadelphia, PA, USA.
Pablo MeyerHealth Care and Life Sciences, IBM T.J. Watson Research Center, Yorktown Heights, NY, USA. pmeyerr@us.ibm.com.ORCID http://orcid.org/0000-0001-5281-4661

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThere is a prevailing view that humans' capacity to use language to characterize sensations like odors or tastes is poor, providing an unreliable source of information.

methodsHere, we developed a machine learning method based on Natural Language Processing (NLP) using Large Language Models (LLM) to predict COVID-19 diagnosis solely based on text descriptions of acute changes in chemosensation, i.e., smell, taste and chemesthesis, caused by the disease. The dataset of more than 1500 subjects was obtained from survey responses early in the COVID-19 pandemic, in Spring 2020.

resultsWhen predicting COVID-19 diagnosis, our NLP model performs comparably (AUC ROC ~ 0.65) to models based on self-reported changes in function collected via quantitative rating scales. Further, our NLP model could attribute importance of words when performing the prediction; sentiment and descriptive words such as "smell", "taste", "sense", had strong contributions to the predictions. In addition, adjectives describing specific tastes or smells such as "salty", "sweet", "spicy", and "sour" also contributed considerably to predictions.

conclusionsOur results show that the description of perceptual symptoms caused by a viral infection can be used to fine-tune an LLM model to correctly predict and interpret the diagnostic status of a subject. In the future, similar models may have utility for patient verbatims from online health portals or electronic health records.

Identifiers

PMID37500763
PMCPMC10374642

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.