Evidence map›Paper›PMID 37499862›Full record

ArticleJournal of endodontics2023

Genome-wide Association Study Identifies Novel Risk Loci for Apical Periodontitis.

Lauren E Petty, Renato Silva, Leticia Chaves de Souza, Alexandre R Vieira, Douglas M Shaw, Jennifer E Below, Ariadne Letra

Open access · greenAbstract read
In one paragraph

Article in Journal of endodontics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Lauren E PettyVanderbilt Genetics Institute, Vanderbilt University Medical Center, Nashville, Tennessee.
Renato SilvaDepartment of Endodontics, University of Pittsburgh School of Dental Medicine, Pittsburgh, Pennsylvania.
Leticia Chaves de SouzaDepartment of Endodontics, UTHealth School of Dentistry at Houston, Houston, Texas.
Alexandre R VieiraDepartment of Oral and Craniofacial Sciences, University of Pittsburgh School of Dental Medicine, Pittsburgh, Pennsylvania.
Douglas M ShawVanderbilt Genetics Institute, Vanderbilt University Medical Center, Nashville, Tennessee.
Jennifer E BelowVanderbilt Genetics Institute, Vanderbilt University Medical Center, Nashville, Tennessee.
Ariadne LetraDepartment of Endodontics, University of Pittsburgh School of Dental Medicine, Pittsburgh, Pennsylvania; Department of Endodontics, UTHealth School of Dentistry at Houston, Houston, Texas; Department of Diagnostic and Biomedical Sciences, UTHealth School of Dentistry at Houston, Houston, Texas; Center for Craniofacial Research, UTHealth School of Dentistry at Houston, Houston, Texas. Electronic address: AriadneLetra@pitt.edu.
University of Pittsburgh · USVanderbilt University Medical Center · USThe University of Texas Health Science Center at Houston · US

Funding

Genomic landscape of apical periodontitisR03DE027494 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LETRA, ARIADNE M · 2018 to 2019
$308k
NIDCR NIH HHS R03 DE027494
6 · The paper itself

Abstract

introductionApical periodontitis (AP) is a common consequence of root canal infection leading to periapical bone resorption. Microbial and host genetic factors and their interactions have been shown to play a role in AP development and progression. Variations in a few genes have been reported in association with AP; however, the lack of genome-wide studies has hindered progress in understanding the molecular mechanisms involved. Here, we report the first genome-wide association study of AP in a large and well-characterized population.

methodsMale and female adults (n = 932) presenting with deep caries and AP (cases), or deep caries without AP (controls) were included. Genotyping was performed using the Illumina Expanded Multi-Ethnic Genotyping Array (MEGA). Single-variant association testing was performed adjusting for sex and 5 principal components. Subphenotype association testing, analyses of genetically regulated gene expression, polygenic risk score, and phenome-wide association (PheWAS) analyses were also conducted.

resultsEight loci reached near genome-wide significant association with AP (P < 5 × 10

conclusionsThis study identified novel genes/loci contributing to AP and specific contributions to AP risk in men and women. Importantly, we identified additional systemic conditions significantly associated with AP risk. Our findings provide strong evidence for host-mediated effects on AP susceptibility.

Indexed as

Genome-Wide Association StudyPeriapical PeriodontitisAdultFemaleGenetic Predisposition to DiseaseHumansMalePolymorphism, Single NucleotideRisk FactorsRoot Canal TherapyGene associationperiapical lesionpulp necrosissusceptibility

Identifiers

PMID37499862
PMCPMC10543637
OpenAlexW4385232790

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.