Evidence map›Paper›PMID 37495569›Full record

ArticleNature communications2023

DNA framework-engineered chimeras platform enables selectively targeted protein degradation.

Li Zhou, Bin Yu, Mengqiu Gao, Rui Chen, Zhiyu Li, Yueqing Gu, Jinlei Bian, Yi Ma

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Supramolecular Degraders: An Emerging Paradigm in Targeted Protein Degradation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  3. Review
  4. Review
  5. Review
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  8. Article
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  10. Review
  11. Article
  12. Review
  13. Bispecific antibody drug conjugates: Making 1+1>2.Acta pharmaceutica Sinica. B · 2024
    Review
  14. Bifunctional Peptide Nanofibrils for Targeted Protein Degradation.Angewandte Chemie (International ed. in English) · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Li ZhouDepartment of Biomedical Engineering, School of Engineering, China Pharmaceutical University, Nanjing, 210009, China.
Bin YuState Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing, 210009, China.
Mengqiu GaoDepartment of Biomedical Engineering, School of Engineering, China Pharmaceutical University, Nanjing, 210009, China.
Rui ChenState Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing, 210009, China.
Zhiyu LiState Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing, 210009, China.
Yueqing GuDepartment of Biomedical Engineering, School of Engineering, China Pharmaceutical University, Nanjing, 210009, China. guengineering@cpu.edu.cn.ORCID 0000-0003-1315-4618
Jinlei BianState Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing, 210009, China. bianjl@cpu.edu.cn.ORCID 0000-0003-4552-1195
Yi MaDepartment of Biomedical Engineering, School of Engineering, China Pharmaceutical University, Nanjing, 210009, China. yima@cpu.edu.cn.ORCID 0000-0003-3514-8614

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A challenge in developing proteolysis targeting chimeras (PROTACs) is the establishment of a universal platform applicable in multiple scenarios for precise degradation of proteins of interest (POIs). Inspired by the addressability, programmability, and rigidity of DNA frameworks, we develop covalent DNA framework-based PROTACs (DbTACs), which can be synthesized in high-throughput via facile bioorthogonal chemistry and self-assembly. DNA tetrahedra are employed as templates and the spatial position of each atom is defined. Thus, by precisely locating ligands of POI and E3 ligase on the templates, ligand spacings can be controllably manipulated from 8 Å to 57 Å. We show that DbTACs with the optimal linker length between ligands achieve higher degradation rates and enhanced binding affinity. Bispecific DbTACs (bis-DbTACs) with trivalent ligand assembly enable multi-target depletion while maintaining highly selective degradation of protein subtypes. When employing various types of warheads (small molecules, antibodies, and DNA motifs), DbTACs exhibit robust efficacy in degrading diverse targets, including protein kinases and transcription factors located in different cellular compartments. Overall, utilizing modular DNA frameworks to conjugate substrates offers a universal platform that not only provides insight into general degrader design principles but also presents a promising strategy for guiding drug discovery.

Indexed as

Transcription FactorsUbiquitin-Protein LigasesLigandsProteolysisUbiquitinationLigandsTranscription FactorsUbiquitin-Protein Ligases

Identifiers

PMID37495569
PMCPMC10372072

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.