Evidence map›Paper›PMID 37494934›Full record

ArticleCell2023

Modeling epigenetic lesions that cause gliomas.

Gilbert J Rahme, Nauman M Javed, Kaitlyn L Puorro, Shouhui Xin, Volker Hovestadt, Sarah E Johnstone, Bradley E Bernstein

Open access · greenAbstract read
In one paragraph

Article in Cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Disruption of CTCF binding by germline non-coding variants inmedRxiv : the preprint server for health sciences · 2026
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  7. Pde4 mediates MHCII expression in oligodendroglia.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Article
  9. CSRP2 modulates PDGFRA/PI3K/AKT signaling via PRC1 components in glioma.Cellular oncology (Dordrecht, Netherlands) · 2026
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Gilbert J RahmeDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Departments of Cell Biology and Pathology, Harvard Medical School, Boston, MA 02215, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Nauman M JavedDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Departments of Cell Biology and Pathology, Harvard Medical School, Boston, MA 02215, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Kaitlyn L PuorroDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Shouhui XinDepartment of Pathology, Massachusetts General Hospital, Boston, MA 02114, USA.
Volker HovestadtBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Department of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Sarah E JohnstoneBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Department of Pathology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Bradley E BernsteinDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Departments of Cell Biology and Pathology, Harvard Medical School, Boston, MA 02215, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA. Electronic address: bradley_bernstein@dfci.harvard.edu.
Broad Institute · USMassachusetts General Hospital · US

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Medical Scientist Training ProgramT32GM144273 · NIGMS · HARVARD MEDICAL SCHOOL · PI David Shumway Jones, Jacqueline A. Lees · 2022 to 2026
$14.7M
Epigenetic plasticity in tumor initiation and evolutionDP1CA216873 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI BERNSTEIN, BRADLEY EVAN · 2016 to 2020
$5.9M
Modeling and Dissecting Epigenetic Drivers of GliomagenesisR00CA267082 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI RAHME, GILBERT J · 2023 to 2025
$688k
Modeling and Dissecting Epigenetic Drivers of GliomagenesisK99CA267082 · NCI · DANA-FARBER CANCER INST · PI RAHME, GILBERT J · 2022 to 2023
$335k
Epigenetic Induction of Gliomagenesis in Neural Progenitor CellsF32CA236432 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI RAHME, GILBERT J · 2019 to 2021
$195k
NCI NIH HHS DP1 CA216873NCI NIH HHS F32 CA236432NCI NIH HHS K99 CA267082NCI NIH HHS R00 CA267082NIGMS NIH HHS T32 GM007753NIGMS NIH HHS T32 GM144273
6 · The paper itself

Abstract

Epigenetic lesions that disrupt regulatory elements represent potential cancer drivers. However, we lack experimental models for validating their tumorigenic impact. Here, we model aberrations arising in isocitrate dehydrogenase-mutant gliomas, which exhibit DNA hypermethylation. We focus on a CTCF insulator near the PDGFRA oncogene that is recurrently disrupted by methylation in these tumors. We demonstrate that disruption of the syntenic insulator in mouse oligodendrocyte progenitor cells (OPCs) allows an OPC-specific enhancer to contact and induce Pdgfra, thereby increasing proliferation. We show that a second lesion, methylation-dependent silencing of the Cdkn2a tumor suppressor, cooperates with insulator loss in OPCs. Coordinate inactivation of the Pdgfra insulator and Cdkn2a drives gliomagenesis in vivo. Despite locus synteny, the insulator is CpG-rich only in humans, a feature that may confer human glioma risk but complicates mouse modeling. Our study demonstrates the capacity of recurrent epigenetic lesions to drive OPC proliferation in vitro and gliomagenesis in vivo.

Indexed as

Brain NeoplasmsEpigenesis, GeneticGliomaAnimalsCyclin-Dependent Kinase Inhibitor p16DNA MethylationHumansIsocitrate DehydrogenaseMiceMutationOncogenesReceptor, Platelet-Derived Growth Factor alphaCdkn2a protein, mouseCyclin-Dependent Kinase Inhibitor p16Isocitrate DehydrogenaseReceptor, Platelet-Derived Growth Factor alphaCDKN2Acell of originchromatinDNA methylationgenome topologygliomaIDH mutationnuclear architectureoligodendrocyte progenitor cellsPDGFRA

Identifiers

PMID37494934
PMCPMC10530192
OpenAlexW4385244380

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.