Evidence map›Paper›PMID 37494330›Full record

ArticlePloS one2023

Genomic alterations involved in fluoroquinolone resistance development in Staphylococcus aureus.

Thuc Quyen Huynh, Van Nhi Tran, Van Chi Thai, Hoang An Nguyen, Ngoc Thuy Giang Nguyen, Minh Khang Tran, Thi Phuong Truc Nguyen, Cat Anh Le, Le Thanh Ngan Ho, Navenaah Udaya Surian and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

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  11. Frontiers in veterinary science · 2025
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  14. Genetic Complexity of CC5Pathogens (Basel, Switzerland) · 2024
    Article
  15. Article
  16. Whole genome sequencing distinguishes skin colonizing from infection-associatedFrontiers in cellular and infection microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Thuc Quyen HuynhSchool of Biotechnology, International University, Ho Chi Minh City, Vietnam.
Van Nhi TranSchool of Biotechnology, International University, Ho Chi Minh City, Vietnam.
Van Chi ThaiSchool of Biotechnology, International University, Ho Chi Minh City, Vietnam.
Hoang An NguyenSchool of Biotechnology, International University, Ho Chi Minh City, Vietnam.ORCID 0000-0003-4929-0187
Ngoc Thuy Giang NguyenSchool of Biotechnology, International University, Ho Chi Minh City, Vietnam.
Minh Khang TranSchool of Biotechnology, International University, Ho Chi Minh City, Vietnam.
Thi Phuong Truc NguyenSchool of Biotechnology, International University, Ho Chi Minh City, Vietnam.
Cat Anh LeSchool of Biotechnology, International University, Ho Chi Minh City, Vietnam.
Le Thanh Ngan HoSchool of Biotechnology, International University, Ho Chi Minh City, Vietnam.
Navenaah Udaya SurianGenome Institute of Singapore, Singapore, Singapore.
Swaine ChenGenome Institute of Singapore, Singapore, Singapore.
Thi Thu Hoai NguyenSchool of Biotechnology, International University, Ho Chi Minh City, Vietnam.ORCID 0000-0003-4869-1827
Vietnam National University Ho Chi Minh City · VNGenome Institute of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimFluoroquinolone (FQ) is a potent antibiotic class. However, resistance to this class emerges quickly which hinders its application. In this study, mechanisms leading to the emergence of multidrug-resistant (MDR) Staphylococcus aureus (S. aureus) strains under FQ exposure were investigated. METHODOLOGY: S. aureus ATCC 29213 was serially exposed to ciprofloxacin (CIP), ofloxacin (OFL), or levofloxacin (LEV) at sub-minimum inhibitory concentrations (sub-MICs) for 12 days to obtain S. aureus -1 strains and antibiotic-free cultured for another 10 days to obtain S. aureus-2 strains. The whole genome (WGS) and target sequencing were applied to analyze genomic alterations; and RT-qPCR was used to access the expressions of efflux-related genes, alternative sigma factors, and genes involved in FQ resistance.

resultsA strong and irreversible increase of MICs was observed in all applied FQs (32 to 128 times) in all S. aureus-1 and remained 16 to 32 times in all S. aureus-2. WGS indicated 10 noticeable mutations occurring in all FQ-exposed S. aureus including 2 insdel mutations in SACOL0573 and rimI; a synonymous mutation in hslO; and 7 missense mutations located in an untranslated region. GrlA, was found mutated (R570H) in all S. aureus-1 and -2. Genes encoding for efflux pumps and their regulator (norA, norB, norC, and mgrA); alternative sigma factors (sigB and sigS); acetyltransferase (rimI); methicillin resistance (fmtB); and hypothetical protein BJI72_0645 were overexpressed in FQ-exposed strains.

conclusionThe emergence of MDR S. aureus was associated with the mutations in the FQ-target sequences and the overexpression of efflux pump systems and their regulators.

Indexed as

Staphylococcal InfectionsStaphylococcus aureusAnti-Bacterial AgentsBacterial ProteinsCiprofloxacinFluoroquinolonesGenomicsHumansMicrobial Sensitivity TestsAnti-Bacterial AgentsBacterial ProteinsCiprofloxacinFluoroquinolones

Identifiers

PMID37494330
PMCPMC10370734
OpenAlexW4385267635

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.