ArticleGigaScience2022
Genomic analyses provide insights into the evolution and salinity adaptation of halophyte Tamarix chinensis.
Article in GigaScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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20 citing papers in PubMed, 27 citations in OpenAlex.
- Article
- Phylogenetic study and accurate identification of Tamarix species in China based on complete chloroplast genomes.BMC plant biology · 2026Article
- From structure to design: experimental and AI-driven approaches in receptor-binding protein engineering for reprogramming phage host range.Archives of microbiology · 2026Review
- Genome evolution and regulatory dynamics underlying salt stress tolerance in the halophyte Halogeton arachnoideus.Communications biology · 2026Article
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- Deciphering the Sodium Sensing Mechanisms in Glycophytes and Halophytes.Plant, cell & environment · 2025Review
- Metagenomic analysis reveals Bacillus cereus OTU8977 as a potential probiotic in promoting walnut growth.BMC plant biology · 2025Article
- Genome-wide identification of five fern bHLH families and functional analysis of bHLHs in lignin biosynthesis in Alsophila spinulosa.BMC genomics · 2025Article
- Genome assembly of Stewartia sinensis reveals origin and evolution of orphan genes in Theaceae.Communications biology · 2025Article
- Pan-genome analyses of 11 Fraxinus species provide insights into salt adaptation in ash trees.Plant communications · 2025Article
- A chromosome-scale genome assembly of the pioneer plant Stylosanthes angustifolia: insights into genome evolution and drought adaptation.GigaScience · 2025Article
- Codon usage bias analysis of theFrontiers in genetics · 2025Article
- Population genetic diversity and environmental adaptation of Tamarix hispida in the Tarim Basin, arid Northwestern China.Heredity · 2024Article
- Comparative study on chloroplast genome ofEcology and evolution · 2024Article
- Differences in Metabolic Characteristics of Rhizosphere Fungal Community of Typical Arboreal, Shrubby and Herbaceous Species in Oasis of Arid Region.Journal of fungi (Basel, Switzerland) · 2024Article
- The Yellow River is the key corridor forEcology and evolution · 2024Article
- A chromosome-level genome assembly provides insights into the local adaptation of Tamarix austromongolica in the Yellow River Basin, China.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024Article
- Chromosome-level genome assembly and annotation of xerophyte secretohalophyte Reaumuria soongarica.Scientific data · 2024Article
- The role of WRKY transcription factors in exogenous potassium (KFrontiers in genetics · 2023Article
- Genomic analyses provide insights into the evolution and salinity adaptation of halophyte Tamarix chinensis.GigaScience · 2022Article
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Authors and funding
14 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe woody halophyte Tamarix chinensis is a pioneer tree species in the coastal wetland ecosystem of northern China, exhibiting high resistance to salt stress. However, the genetic information underlying salt tolerance in T. chinensis remains to be seen. Here we present a genomic investigation of T. chinensis to elucidate the underlying mechanism of its high resistance to salinity.
resultsUsing a combination of PacBio and high-throughput chromosome conformation capture data, a chromosome-level T. chinensis genome was assembled with a size of 1.32 Gb and scaffold N50 of 110.03 Mb. Genome evolution analyses revealed that T. chinensis significantly expanded families of HAT and LIMYB genes. Whole-genome and tandem duplications contributed to the expansion of genes associated with the salinity adaptation of T. chinensis. Transcriptome analyses were performed on root and shoot tissues during salt stress and recovery, and several hub genes responding to salt stress were identified. WRKY33/40, MPK3/4, and XBAT31 were critical in responding to salt stress during early exposure, while WRKY40, ZAT10, AHK4, IRX9, and CESA4/8 were involved in responding to salt stress during late stress and recovery. In addition, PER7/27/57/73 encoding class III peroxidase and MCM3/4/5/7 encoding DNA replication licensing factor maintained up/downregulation during salt stress and recovery stages.
conclusionsThe results presented here reveal the genetic mechanisms underlying salt adaptation in T. chinensis, thus providing important genomic resources for evolutionary studies on tamarisk and plant salt tolerance genetic improvement.
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