Evidence map›Paper›PMID 37492262›Full record

ArticleFrontiers in microbiology2023

Rapid identification of bacteria using a multiplex polymerase chain reaction system for acute abdominal infections.

Nanako Kakizaki, Koji Asai, Makoto Kuroda, Ryutaro Watanabe, Manabu Kujiraoka, Tsuyoshi Sekizuka, Miwa Katagiri, Hodaka Moriyama, Manabu Watanabe, Yoshihisa Saida

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
  5. Article
  6. Observational
  7. Controversies in nosocomial peritonitis.Revista espanola de quimioterapia : publicacion oficial de la Sociedad Espanola de Quimioterapia · 2025
    Review
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Nanako KakizakiDepartment of Surgery, Toho University Ohashi Medical Center, Tokyo, Japan.
Koji AsaiDepartment of Surgery, Toho University Ohashi Medical Center, Tokyo, Japan.
Makoto KurodaLaboratory of Bacterial Genomics, National Institute of Infectious Diseases, Pathogen Genomics Center, Tokyo, Japan.
Ryutaro WatanabeDepartment of Surgery, Toho University Ohashi Medical Center, Tokyo, Japan.
Manabu KujiraokaDepartment of Surgery, Toho University Ohashi Medical Center, Tokyo, Japan.
Tsuyoshi SekizukaLaboratory of Bacterial Genomics, National Institute of Infectious Diseases, Pathogen Genomics Center, Tokyo, Japan.
Miwa KatagiriDepartment of Surgery, Toho University Ohashi Medical Center, Tokyo, Japan.
Hodaka MoriyamaDepartment of Surgery, Toho University Ohashi Medical Center, Tokyo, Japan.
Manabu WatanabeDepartment of Surgery, Toho University Ohashi Medical Center, Tokyo, Japan.
Yoshihisa SaidaDepartment of Surgery, Toho University Ohashi Medical Center, Tokyo, Japan.
Toho University Ohashi Medical Center · JPToho University · JPNational Institute of Infectious Diseases · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: Acute abdominal infections can be fatal if the causative organism (s) are misidentified. The spread of antimicrobial-resistant bacteria has become a serious problem worldwide, making antibiotic selection extremely difficult. Using quantitative metagenomic analysis, we evaluated a commercial multiplex polymerase chain reaction (PCR) system (FilmArray™, bioMérieux, Marcy-l'Étoile, France) for the rapid identification of causative bacteria. Methods: The cases of 10 patients with acute abdominal infections were enrolled in this retrospective study. There were six cases of perforated peritonitis and four cases of intraabdominal abscess. Fluid collected from the acute surgical abdominal infections were examined. Results: All specimens tested positive for microorganisms in culture, and six involved two or more microorganisms. Using the multiplex PCR system, nine of ten specimens were found to involve at least one microorganism. One specimen was not included in the multiplex PCR system panel. Nineteen of 21 microorganisms (90.5%) isolated by culture were detected by the multiplex PCR system. Microorganisms with very small numbers of reads (19 reads) were detectable. Conclusion: This multiplex PCR system showed a high detection rate for causative microorganisms in ascites and intraabdominal abscesses. This system may be suitable as an affordable rapid identification system for causative bacteria in these cases.

Indexed as

acute abdominal infectionsFilmArray systemmetagenomic analysismultiplex polymerase chain reaction systemrapid identification

Identifiers

PMID37492262
PMCPMC10363666
OpenAlexW4383818205

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.