Evidence map›Paper›PMID 37491910›Full record

ArticleJournal of the Royal Society, Interface2023

Maximum mutational robustness in genotype-phenotype maps follows a self-similar blancmange-like curve.

Vaibhav Mohanty, Sam F Greenbury, Tasmin Sarkany, Shyam Narayanan, Kamaludin Dingle, Sebastian E Ahnert, Ard A Louis

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Vaibhav MohantyRudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford, UK.ORCID 0000-0003-1475-4228
Sam F GreenburyTheory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, Cambridge, UK.ORCID 0000-0003-4452-2006
Tasmin SarkanyWellcome-MRC Cambridge Stem Cell Institute, University of Cambridge, Cambridge, UK.
Shyam NarayananDepartment of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA.
Kamaludin DingleDepartment of Mathematics and Natural Sciences, Centre for Applied Mathematics and Bioinformatics (CAMB), Gulf University of Science and Technology, Kuwait.
Sebastian E AhnertTheory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, Cambridge, UK.ORCID 0000-0003-2613-0041
Ard A LouisRudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford, UK.ORCID 0000-0002-8438-910X

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Medical Scientist Training ProgramT32GM144273 · NIGMS · HARVARD MEDICAL SCHOOL · PI David Shumway Jones, Jacqueline A. Lees · 2022 to 2026
$14.7M
NIGMS NIH HHS T32 GM007753NIGMS NIH HHS T32 GM144273
6 · The paper itself

Abstract

Phenotype robustness, defined as the average mutational robustness of all the genotypes that map to a given phenotype, plays a key role in facilitating neutral exploration of novel phenotypic variation by an evolving population. By applying results from coding theory, we prove that the maximum phenotype robustness occurs when genotypes are organized as bricklayer's graphs, so-called because they resemble the way in which a bricklayer would fill in a Hamming graph. The value of the maximal robustness is given by a fractal continuous everywhere but differentiable nowhere sums-of-digits function from number theory. Interestingly, genotype-phenotype maps for RNA secondary structure and the hydrophobic-polar (HP) model for protein folding can exhibit phenotype robustness that exactly attains this upper bound. By exploiting properties of the sums-of-digits function, we prove a lower bound on the deviation of the maximum robustness of phenotypes with multiple neutral components from the bricklayer's graph bound, and show that RNA secondary structure phenotypes obey this bound. Finally, we show how robustness changes when phenotypes are coarse-grained and derive a formula and associated bounds for the transition probabilities between such phenotypes.

Indexed as

Evolution, MolecularModels, GeneticGenotypeMutationPhenotypeRNARNAblancmange curvegenotype–phenotype mapsmutational robustnessphenotype coarse-grainingTakagiTrollope–Delange

Identifiers

PMID37491910
PMCPMC10369032

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.